Analysis of interatomic Contacts of Structural Units in PDB entry:
3UO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UO8 entry

There are 2 chains in PDB entry 3UO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 338LEU 715
C
 MET 338SER 617
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3UO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
361 376Right-handed alpha
Helix 2
2
B
387 402Right-handed alpha
Helix 3
3
B
435 439Right-handed 310
Helix 4
4
B
442 451Right-handed alpha
Helix 5
5
B
509 516Right-handed alpha
Helix 6
6
B
524 537Right-handed alpha
Helix 7
7
B
580 584Right-handed 310
Helix 8
8
B
636 640Right-handed 310
Helix 9
9
B
642 646Right-handed 310
Helix 10
10
B
650 655Right-handed 310
Helix 11
11
B
659 663Right-handed 310
Helix 12
12
B
674 678Right-handed 310
Helix 13
13
B
710 715Right-handed 310
Helix 14
14
C
361 376Right-handed alpha
Helix 15
15
C
387 401Right-handed alpha
Helix 16
16
C
435 439Right-handed 310
Helix 17
17
C
442 451Right-handed alpha
Helix 18
18
C
509 516Right-handed alpha
Helix 19
19
C
524 537Right-handed alpha
Helix 20
20
C
578 583Right-handed alpha
Helix 21
21
C
636 640Right-handed 310
Helix 22
22
C
651 655Right-handed 310
Helix 23
23
C
674 678Right-handed 310
Helix 24
24
C
710 716Right-handed 310
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There are 9 sheets in PDB entry 3UO8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
379 384first strand
Strand 2
B
343 349parallel
Strand 3
B
407 413parallel
Strand 4
B
456 462parallel
Strand 5
B
486 490parallel
Strand 6
B
549 552anti-parallel
Strand 7
C
549 552anti-parallel
Strand 8
C
486 490anti-parallel
Strand 9
C
456 462parallel
Strand 10
C
407 413parallel
Strand 11
C
343 349parallel
Strand 12
C
379 384parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
416 419first strand
Strand 2
B
422 425anti-parallel
Strand 3
B
440 441anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
499 500first strand
Strand 2
L
2 3anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
590 593first strand
Strand 2
B
599 608anti-parallel
Strand 3
B
611 620anti-parallel
Strand 4
B
668 672anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
625 633first strand
Strand 2
B
683 692anti-parallel
Strand 3
B
699 706anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
416 419first strand
Strand 2
C
422 425anti-parallel
Strand 3
C
440 441anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
499 500first strand
Strand 2
M
2 3anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
590 593first strand
Strand 2
C
599 608anti-parallel
Strand 3
C
611 620anti-parallel
Strand 4
C
668 672anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
625 633first strand
Strand 2
C
683 692anti-parallel
Strand 3
C
699 706anti-parallel
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