Analysis of interatomic Contacts of Structural Units in PDB entry:
3UOB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UOB entry

There are 5 chains in PDB entry 3UOB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 C 1 A 23
D
 C 1 A 10
D
 G 12 T 23
A
 THR 123GLU 303
B
 THR 123ARG 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3UOB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
142 149Right-handed alpha
Helix 2
2
A
158 167Right-handed alpha
Helix 3
3
A
174 181Right-handed 310
Helix 4
4
A
204 223Right-handed alpha
Helix 5
5
A
231 242Right-handed alpha
Helix 6
6
A
281 303Right-handed alpha
Helix 7
7
B
142 149Right-handed alpha
Helix 8
8
B
157 166Right-handed alpha
Helix 9
9
B
174 178Right-handed 310
Helix 10
10
B
180 185Right-handed alpha
Helix 11
11
B
199 203Right-handed 310
Helix 12
12
B
204 223Right-handed alpha
Helix 13
13
B
231 243Right-handed alpha
Helix 14
14
B
286 304Right-handed alpha
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There are 2 sheets in PDB entry 3UOB. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 191first strand
Strand 2
A
134 138parallel
Strand 3
A
226 230parallel
Strand 4
A
265 269parallel
Strand 5
A
253 258anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 191first strand
Strand 2
B
134 138parallel
Strand 3
B
226 229parallel
Strand 4
B
265 268parallel
Strand 5
B
253 258anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il