Analysis of interatomic Contacts of Structural Units in PDB entry:
3UOG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UOG entry

There are 2 chains in PDB entry 3UOG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 0PHE 340
B
 MSE 0PHE 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3UOG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 53Right-handed alpha
Helix 2
2
A
140 146Right-handed alpha
Helix 3
3
A
149 159Right-handed alpha
Helix 4
4
A
176 189Right-handed alpha
Helix 5
5
A
199 210Right-handed alpha
Helix 6
6
A
221 231Right-handed alpha
Helix 7
7
A
246 253Right-handed alpha
Helix 8
8
A
276 281Right-handed alpha
Helix 9
9
A
292 307Right-handed alpha
Helix 10
10
A
320 327Right-handed alpha
Helix 11
11
A
328 331Right-handed 310
Helix 12
12
B
43 53Right-handed alpha
Helix 13
13
B
54 56Right-handed 310
Helix 14
14
B
140 145Right-handed alpha
Helix 15
15
B
149 159Right-handed alpha
Helix 16
16
B
176 189Right-handed alpha
Helix 17
17
B
199 210Right-handed alpha
Helix 18
18
B
221 230Right-handed alpha
Helix 19
19
B
246 253Right-handed alpha
Helix 20
20
B
275 281Right-handed alpha
Helix 21
21
B
292 307Right-handed alpha
Helix 22
22
B
320 328Right-handed alpha
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There are 8 sheets in PDB entry 3UOG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 9first strand
Strand 2
A
19 24anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
32 41anti-parallel
Strand 3
A
67 75anti-parallel
Strand 4
A
87 90anti-parallel
Strand 5
A
132 134anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
32 41anti-parallel
Strand 3
A
335 339anti-parallel
Strand 4
A
312 317parallel
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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 216first strand
Strand 2
A
192 197parallel
Strand 3
A
169 173parallel
Strand 4
A
235 241parallel
Strand 5
A
254 263parallel
Strand 6
A
284 287parallel
Strand 7
B
284 287anti-parallel
Strand 8
B
254 263parallel
Strand 9
B
235 241parallel
Strand 10
B
169 173parallel
Strand 11
B
192 197parallel
Strand 12
B
213 216parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
B
273 274anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 9first strand
Strand 2
B
19 24anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 128first strand
Strand 2
B
32 42anti-parallel
Strand 3
B
67 75anti-parallel
Strand 4
B
87 90anti-parallel
Strand 5
B
132 134anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 128first strand
Strand 2
B
32 42anti-parallel
Strand 3
B
335 339anti-parallel
Strand 4
B
312 317parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il