Analysis of interatomic Contacts of Structural Units in PDB entry:
3UOL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UOL entry

There are 2 chains in PDB entry 3UOL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 127LYS 389
B
 GLN 127LYS 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3UOL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
129 131Right-handed 310
Helix 2
2
A
166 172Right-handed alpha
Helix 3
3
A
175 180Right-handed alpha
Helix 4
4
A
181 188Right-handed alpha
Helix 5
5
A
218 226Right-handed alpha
Helix 6
6
A
229 250Right-handed alpha
Helix 7
7
A
258 260Right-handed 310
Helix 8
8
A
292 296Right-handed 310
Helix 9
9
A
297 302Right-handed alpha
Helix 10
10
A
309 325Right-handed alpha
Helix 11
11
A
333 343Right-handed alpha
Helix 12
12
A
353 364Right-handed alpha
Helix 13
13
A
367 371Right-handed 310
Helix 14
14
A
373 380Right-handed alpha
Helix 15
15
A
380 387Right-handed alpha
Helix 16
16
B
129 131Right-handed 310
Helix 17
17
B
166 172Right-handed alpha
Helix 18
18
B
175 180Right-handed alpha
Helix 19
19
B
181 188Right-handed alpha
Helix 20
20
B
218 226Right-handed alpha
Helix 21
21
B
229 250Right-handed alpha
Helix 22
22
B
258 260Right-handed 310
Helix 23
23
B
292 296Right-handed 310
Helix 24
24
B
297 302Right-handed alpha
Helix 25
25
B
309 325Right-handed alpha
Helix 26
26
B
333 343Right-handed alpha
Helix 27
27
B
353 364Right-handed alpha
Helix 28
28
B
367 371Right-handed 310
Helix 29
29
B
373 380Right-handed alpha
Helix 30
30
B
380 387Right-handed alpha
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There are 4 sheets in PDB entry 3UOL. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 201first strand
Strand 2
A
206 210anti-parallel
Strand 3
A
158 164anti-parallel
Strand 4
A
146 152anti-parallel
Strand 5
A
133 142anti-parallel
Strand 6
A
279 280anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
262 264anti-parallel
Strand 3
A
270 272anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 201first strand
Strand 2
B
206 210anti-parallel
Strand 3
B
158 164anti-parallel
Strand 4
B
146 152anti-parallel
Strand 5
B
133 142anti-parallel
Strand 6
B
279 280anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
262 264anti-parallel
Strand 3
B
270 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il