Analysis of interatomic Contacts of Structural Units in PDB entry:
3UP0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UP0 entry

There are 4 chains in PDB entry 3UP0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 444GLU 685
P
 GLU 741ASP 753
B
 SER 444GLU 685
Q
 GLU 741ASP 752
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3UP0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
448 463Right-handed alpha
Helix 2
2
A
472 480Right-handed alpha
Helix 3
3
A
484 505Right-handed alpha
Helix 4
4
A
506 511Right-handed alpha
Helix 5
5
A
513 536Right-handed alpha
Helix 6
6
A
558 563Right-handed 310
Helix 7
7
A
567 581Right-handed alpha
Helix 8
8
A
583 588Right-handed alpha
Helix 9
9
A
589 602Right-handed alpha
Helix 10
10
A
610 637Right-handed alpha
Helix 11
11
A
639 662Right-handed alpha
Helix 12
12
A
670 674Right-handed 310
Helix 13
13
A
675 682Right-handed alpha
Helix 14
14
P
742 751Right-handed alpha
Helix 15
15
B
448 463Right-handed alpha
Helix 16
16
B
472 480Right-handed alpha
Helix 17
17
B
484 505Right-handed alpha
Helix 18
18
B
506 511Right-handed alpha
Helix 19
19
B
513 536Right-handed alpha
Helix 20
20
B
558 563Right-handed 310
Helix 21
21
B
567 581Right-handed alpha
Helix 22
22
B
583 588Right-handed alpha
Helix 23
23
B
589 602Right-handed alpha
Helix 24
24
B
610 637Right-handed alpha
Helix 25
25
B
639 660Right-handed alpha
Helix 26
26
B
670 674Right-handed 310
Helix 27
27
B
675 682Right-handed alpha
Helix 28
28
Q
742 751Right-handed alpha
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There are 2 sheets in PDB entry 3UP0. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 538first strand
Strand 2
A
543 544anti-parallel
Strand 3
A
555 556anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
537 538first strand
Strand 2
B
543 544anti-parallel
Strand 3
B
555 556anti-parallel
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