Analysis of interatomic Contacts of Structural Units in PDB entry:
3UP3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UP3 entry

There are 2 chains in PDB entry 3UP3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 444GLU 685
P
 ASN 742THR 754
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3UP3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
448 463Right-handed alpha
Helix 2
2
A
472 480Right-handed alpha
Helix 3
3
A
484 506Right-handed alpha
Helix 4
4
A
506 511Right-handed alpha
Helix 5
5
A
513 536Right-handed alpha
Helix 6
6
A
558 563Right-handed 310
Helix 7
7
A
567 581Right-handed alpha
Helix 8
8
A
583 588Right-handed alpha
Helix 9
9
A
589 602Right-handed alpha
Helix 10
10
A
610 637Right-handed alpha
Helix 11
11
A
639 660Right-handed alpha
Helix 12
12
A
670 674Right-handed 310
Helix 13
13
A
675 680Right-handed alpha
Helix 14
14
P
743 751Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3UP3.

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 538first strand
Strand 2
A
543 544anti-parallel
Strand 3
A
555 556anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il