Analysis of interatomic Contacts of Structural Units in PDB entry:
3UP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UP6 entry

There are 2 chains in PDB entry 3UP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 35TRP 358
B
 THR 35TRP 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3UP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
111 113Right-handed 310
Helix 2
2
A
114 120Right-handed alpha
Helix 3
3
A
123 129Right-handed alpha
Helix 4
4
A
135 137Right-handed 310
Helix 5
5
A
217 221Right-handed 310
Helix 6
6
A
227 231Right-handed 310
Helix 7
7
B
111 120Right-handed alpha
Helix 8
8
B
123 129Right-handed alpha
Helix 9
9
B
135 137Right-handed 310
Helix 10
10
B
227 231Right-handed 310
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There are 14 sheets in PDB entry 3UP6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 97first strand
Strand 2
A
36 44anti-parallel
Strand 3
A
166 172parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 84first strand
Strand 2
A
55 65anti-parallel
Strand 3
A
99 108anti-parallel
Strand 4
A
152 161anti-parallel
Strand 5
A
174 175anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
210 212anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 276first strand
Strand 2
A
178 186anti-parallel
Strand 3
A
336 343parallel
Strand 4
A
348 355anti-parallel
Strand 5
A
313 316parallel
Strand 6
A
325 327anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 248first strand
Strand 2
A
201 207anti-parallel
Strand 3
A
290 298anti-parallel
Strand 4
A
193 195anti-parallel
Strand 5
A
255 257anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 248first strand
Strand 2
A
201 207anti-parallel
Strand 3
A
290 298anti-parallel
Strand 4
A
303 310anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
330 331anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 97first strand
Strand 2
B
36 44anti-parallel
Strand 3
B
166 172parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 84first strand
Strand 2
B
55 65anti-parallel
Strand 3
B
99 108anti-parallel
Strand 4
B
152 161anti-parallel
Strand 5
B
174 175anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 133first strand
Strand 2
B
210 212anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 276first strand
Strand 2
B
178 186anti-parallel
Strand 3
B
336 343parallel
Strand 4
B
348 355anti-parallel
Strand 5
B
313 316parallel
Strand 6
B
325 327anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 248first strand
Strand 2
B
201 207anti-parallel
Strand 3
B
290 298anti-parallel
Strand 4
B
193 195anti-parallel
Strand 5
B
255 257anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 248first strand
Strand 2
B
201 207anti-parallel
Strand 3
B
290 298anti-parallel
Strand 4
B
303 310anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 280first strand
Strand 2
B
330 331anti-parallel
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