Analysis of interatomic Contacts of Structural Units in PDB entry:
3UP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UP8 entry

There are 2 chains in PDB entry 3UP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -5ALA 275
B
 LEU -5ALA 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3UP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-5 0Right-handed 310
Helix 2
2
A
22 37Right-handed alpha
Helix 3
3
A
49 60Right-handed alpha
Helix 4
4
A
63 67Right-handed 310
Helix 5
5
A
74 78Right-handed 310
Helix 6
6
A
79 95Right-handed alpha
Helix 7
7
A
112 126Right-handed alpha
Helix 8
8
A
138 149Right-handed alpha
Helix 9
9
A
166 177Right-handed alpha
Helix 10
10
A
186 188Right-handed 310
Helix 11
11
A
189 194Right-handed alpha
Helix 12
12
A
194 204Right-handed alpha
Helix 13
13
A
207 218Right-handed alpha
Helix 14
14
A
230 239Right-handed alpha
Helix 15
15
A
246 255Right-handed alpha
Helix 16
16
B
-5 0Right-handed 310
Helix 17
17
B
5 9Right-handed 310
Helix 18
18
B
22 37Right-handed alpha
Helix 19
19
B
44 48Right-handed 310
Helix 20
20
B
49 61Right-handed alpha
Helix 21
21
B
63 67Right-handed 310
Helix 22
22
B
74 78Right-handed 310
Helix 23
23
B
79 95Right-handed alpha
Helix 24
24
B
112 126Right-handed alpha
Helix 25
25
B
138 149Right-handed alpha
Helix 26
26
B
166 177Right-handed alpha
Helix 27
27
B
186 193Right-handed 310
Helix 28
28
B
194 204Right-handed alpha
Helix 29
29
B
207 218Right-handed alpha
Helix 30
30
B
230 239Right-handed alpha
Helix 31
31
B
246 255Right-handed alpha
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There are 4 sheets in PDB entry 3UP8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
11 12anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
40 42parallel
Strand 3
A
68 73parallel
Strand 4
A
99 104parallel
Strand 5
A
129 135parallel
Strand 6
A
153 159parallel
Strand 7
A
179 183parallel
Strand 8
A
222 226parallel
Strand 9
A
14 17parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
11 12anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
40 42parallel
Strand 3
B
68 73parallel
Strand 4
B
99 104parallel
Strand 5
B
129 135parallel
Strand 6
B
153 159parallel
Strand 7
B
179 183parallel
Strand 8
B
222 226parallel
Strand 9
B
14 17parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il