Analysis of interatomic Contacts of Structural Units in PDB entry:
3UP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UP9 entry

There is 1 chain in PDB entry 3UP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 37MSE 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3UP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 61Right-handed alpha
Helix 2
2
A
61 66Right-handed alpha
Helix 3
3
A
77 86Right-handed alpha
Helix 4
4
A
97 108Right-handed alpha
Helix 5
5
A
131 135Right-handed 310
Helix 6
6
A
146 160Right-handed alpha
Helix 7
7
A
189 191Right-handed 310
Helix 8
8
A
192 197Right-handed alpha
Helix 9
9
A
206 213Right-handed alpha
Helix 10
10
A
216 221Right-handed alpha
Helix 11
11
A
244 256Right-handed alpha
Helix 12
12
A
257 268Right-handed alpha
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There are 4 sheets in PDB entry 3UP9. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 73first strand
Strand 2
A
39 45parallel
Strand 3
A
91 96parallel
Strand 4
A
233 239anti-parallel
Strand 5
A
111 113anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 73first strand
Strand 2
A
39 45parallel
Strand 3
A
91 96parallel
Strand 4
A
233 239anti-parallel
Strand 5
A
118 119anti-parallel
Strand 6
A
274 275anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 188first strand
Strand 2
A
139 144parallel
Strand 3
A
202 205parallel
Strand 4
A
123 125anti-parallel
Strand 5
A
223 224anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
178 179anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il