Analysis of interatomic Contacts of Structural Units in PDB entry:
3UPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UPD entry

There is 1 chain in PDB entry 3UPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -22SER 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3UPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-3 6Right-handed alpha
Helix 2
2
A
12 16Right-handed 310
Helix 3
3
A
17 38Right-handed alpha
Helix 4
4
A
57 71Right-handed alpha
Helix 5
5
A
90 102Right-handed alpha
Helix 6
6
A
111 122Right-handed alpha
Helix 7
7
A
135 149Right-handed alpha
Helix 8
8
A
154 157Right-handed 310
Helix 9
9
A
168 181Right-handed alpha
Helix 10
10
A
190 194Right-handed 310
Helix 11
11
A
196 211Right-handed alpha
Helix 12
12
A
219 225Right-handed alpha
Helix 13
13
A
241 253Right-handed alpha
Helix 14
14
A
254 256Right-handed 310
Helix 15
15
A
258 264Right-handed alpha
Helix 16
16
A
284 295Right-handed alpha
Helix 17
17
A
302 307Right-handed alpha
Helix 18
18
A
312 333Right-handed alpha
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There are 2 sheets in PDB entry 3UPD. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 78first strand
Strand 2
A
48 53parallel
Strand 3
A
104 108parallel
Strand 4
A
126 130parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 217first strand
Strand 2
A
184 188parallel
Strand 3
A
159 163parallel
Strand 4
A
229 232parallel
Strand 5
A
271 274parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il