Analysis of interatomic Contacts of Structural Units in PDB entry:
3UPG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UPG entry

There is 1 chain in PDB entry 3UPG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PHE 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 3UPG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
97 102Right-handed alpha
Helix 2
2
A
103 105Right-handed 310
Helix 3
3
A
316 322Right-handed alpha
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There are 2 sheets in PDB entry 3UPG. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
9 12anti-parallel
Strand 3
A
35 45anti-parallel
Strand 4
A
15 23anti-parallel
Strand 5
A
31 32anti-parallel
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There are 19 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
9 12anti-parallel
Strand 3
A
35 45anti-parallel
Strand 4
A
50 61anti-parallel
Strand 5
A
71 82anti-parallel
Strand 6
A
87 92anti-parallel
Strand 7
A
129 133anti-parallel
Strand 8
A
143 150anti-parallel
Strand 9
A
163 170anti-parallel
Strand 10
A
176 184anti-parallel
Strand 11
A
207 217anti-parallel
Strand 12
A
220 228anti-parallel
Strand 13
A
245 253anti-parallel
Strand 14
A
260 269anti-parallel
Strand 15
A
285 299anti-parallel
Strand 16
A
302 311anti-parallel
Strand 17
A
329 336anti-parallel
Strand 18
A
15 23anti-parallel
Strand 19
A
31 32anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il