Analysis of interatomic Contacts of Structural Units in PDB entry:
3UPW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UPW entry

There is 1 chain in PDB entry 3UPW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLU 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3UPW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
46 56Right-handed alpha
Helix 3
3
A
72 76Right-handed 310
Helix 4
4
A
87 104Right-handed alpha
Helix 5
5
A
115 119Right-handed 310
Helix 6
6
A
120 127Right-handed alpha
Helix 7
7
A
140 150Right-handed alpha
Helix 8
8
A
158 168Right-handed alpha
Helix 9
9
A
168 180Right-handed alpha
Helix 10
10
A
193 200Right-handed alpha
Helix 11
11
A
213 233Right-handed alpha
Helix 12
12
A
246 250Right-handed 310
Helix 13
13
A
251 255Right-handed 310
Helix 14
14
A
258 276Right-handed alpha
Helix 15
15
A
297 301Right-handed 310
Helix 16
16
A
305 312Right-handed alpha
Helix 17
17
A
321 326Right-handed 310
Helix 18
18
A
329 337Right-handed alpha
Helix 19
19
A
346 352Right-handed alpha
Helix 20
20
A
354 362Right-handed alpha
Helix 21
21
A
369 373Right-handed 310
Helix 22
22
A
382 386Right-handed 310
Helix 23
23
A
387 391Right-handed 310
Helix 24
24
A
392 398Right-handed alpha
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There are 4 sheets in PDB entry 3UPW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
23 25anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
107 113parallel
Strand 3
A
184 189parallel
Strand 4
A
237 241parallel
Strand 5
A
282 286parallel
Strand 6
A
315 319parallel
Strand 7
A
341 344parallel
Strand 8
A
29 31parallel
Strand 9
A
63 65parallel
Strand 10
A
107 113parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
155 156parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
294 295anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il