Analysis of interatomic Contacts of Structural Units in PDB entry:
3UPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UPY entry

There are 2 chains in PDB entry 3UPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLY 437
B
 THR 2GLY 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 3UPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 20Right-handed alpha
Helix 2
2
A
32 43Right-handed alpha
Helix 3
3
A
58 70Right-handed alpha
Helix 4
4
A
80 90Right-handed alpha
Helix 5
5
A
98 104Right-handed alpha
Helix 6
6
A
117 131Right-handed alpha
Helix 7
7
A
139 157Right-handed alpha
Helix 8
8
A
167 182Right-handed alpha
Helix 9
9
A
202 213Right-handed alpha
Helix 10
10
A
216 225Right-handed alpha
Helix 11
11
A
226 241Right-handed alpha
Helix 12
12
A
255 257Right-handed 310
Helix 13
13
A
258 263Right-handed alpha
Helix 14
14
A
265 269Right-handed 310
Helix 15
15
A
298 308Right-handed alpha
Helix 16
16
A
324 327Right-handed 310
Helix 17
17
A
328 340Right-handed alpha
Helix 18
18
A
383 389Right-handed alpha
Helix 19
19
A
393 397Right-handed 310
Helix 20
20
A
423 437Right-handed alpha
Helix 21
21
B
8 20Right-handed alpha
Helix 22
22
B
32 43Right-handed alpha
Helix 23
23
B
58 70Right-handed alpha
Helix 24
24
B
80 90Right-handed alpha
Helix 25
25
B
98 105Right-handed alpha
Helix 26
26
B
117 131Right-handed alpha
Helix 27
27
B
139 158Right-handed alpha
Helix 28
28
B
167 182Right-handed alpha
Helix 29
29
B
202 213Right-handed alpha
Helix 30
30
B
216 225Right-handed alpha
Helix 31
31
B
226 241Right-handed alpha
Helix 32
32
B
255 257Right-handed 310
Helix 33
33
B
258 263Right-handed alpha
Helix 34
34
B
265 269Right-handed 310
Helix 35
35
B
298 308Right-handed alpha
Helix 36
36
B
324 327Right-handed 310
Helix 37
37
B
328 340Right-handed alpha
Helix 38
38
B
383 389Right-handed alpha
Helix 39
39
B
393 397Right-handed 310
Helix 40
40
B
423 437Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3UPY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
93 96parallel
Strand 3
A
48 54parallel
Strand 4
A
24 29parallel
Strand 5
A
110 113parallel
Strand 6
A
134 137parallel
Strand 7
A
161 163parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 282first strand
Strand 2
A
185 193parallel
Strand 3
A
290 295anti-parallel
Strand 4
A
315 320anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 358first strand
Strand 2
A
376 382anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 402first strand
Strand 2
A
417 418anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
93 96parallel
Strand 3
B
48 54parallel
Strand 4
B
24 29parallel
Strand 5
B
110 113parallel
Strand 6
B
134 137parallel
Strand 7
B
161 163parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 244first strand
Strand 2
B
277 282parallel
Strand 3
B
185 193parallel
Strand 4
B
290 295anti-parallel
Strand 5
B
315 320anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 358first strand
Strand 2
B
376 382anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 402first strand
Strand 2
B
417 418anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il