Analysis of interatomic Contacts of Structural Units in PDB entry:
3UQ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UQ2 entry

There are 4 chains in PDB entry 3UQ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 253TRP 575
T
 C 1 G 11
P
 C 1 A 7
D
 G 1 G 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3UQ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
256 270Right-handed alpha
Helix 2
2
A
272 289Right-handed alpha
Helix 3
3
A
295 302Right-handed alpha
Helix 4
4
A
306 319Right-handed alpha
Helix 5
5
A
322 327Right-handed 310
Helix 6
6
A
331 340Right-handed alpha
Helix 7
7
A
345 355Right-handed alpha
Helix 8
8
A
359 367Right-handed alpha
Helix 9
9
A
370 379Right-handed alpha
Helix 10
10
A
379 384Right-handed alpha
Helix 11
11
A
389 404Right-handed alpha
Helix 12
12
A
415 420Right-handed alpha
Helix 13
13
A
441 454Right-handed alpha
Helix 14
14
A
498 508Right-handed alpha
Helix 15
15
A
509 523Right-handed alpha
Helix 16
16
A
555 563Right-handed alpha
Helix 17
17
A
569 574Right-handed 310
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There are 4 sheets in PDB entry 3UQ2. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
424 425anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 414first strand
Strand 2
A
427 434anti-parallel
Strand 3
A
487 495parallel
Strand 4
A
472 477anti-parallel
Strand 5
A
457 463anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 527first strand
Strand 2
A
532 534anti-parallel
Strand 3
A
549 550anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 538first strand
Strand 2
A
544 546anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il