Analysis of interatomic Contacts of Structural Units in PDB entry:
3UQ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UQ4 entry

There are 10 chains in PDB entry 3UQ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 11	ILE 317
B	PRO 11	ILE 317
C	PRO 11	ILE 317
D	PRO 11	ILE 317
E	PRO 11	ILE 317
F	PRO 11	ILE 317
G	PRO 11	ILE 317
H	PRO 11	ILE 317
I	PRO 11	ILE 317
J	PRO 11	ILE 317

There are 60 helices in PDB entry 3UQ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	60	69	Right-handed alpha
Helix 2	2	A	201	208	Right-handed alpha
Helix 3	3	A	208	221	Right-handed alpha
Helix 4	4	A	228	253	Right-handed alpha
Helix 5	5	A	260	286	Right-handed alpha
Helix 6	6	A	307	312	Right-handed alpha
Helix 7	7	B	60	69	Right-handed alpha
Helix 8	8	B	201	208	Right-handed alpha
Helix 9	9	B	208	221	Right-handed alpha
Helix 10	10	B	228	251	Right-handed alpha
Helix 11	11	B	260	286	Right-handed alpha
Helix 12	12	B	304	312	Right-handed alpha
Helix 13	13	C	60	69	Right-handed alpha
Helix 14	14	C	201	208	Right-handed alpha
Helix 15	15	C	208	221	Right-handed alpha
Helix 16	16	C	228	251	Right-handed alpha
Helix 17	17	C	260	286	Right-handed alpha
Helix 18	18	C	304	312	Right-handed alpha
Helix 19	19	D	60	69	Right-handed alpha
Helix 20	20	D	201	208	Right-handed alpha
Helix 21	21	D	208	221	Right-handed alpha
Helix 22	22	D	228	253	Right-handed alpha
Helix 23	23	D	260	286	Right-handed alpha
Helix 24	24	D	307	312	Right-handed alpha
Helix 25	25	E	60	69	Right-handed alpha
Helix 26	26	E	201	208	Right-handed alpha
Helix 27	27	E	208	221	Right-handed alpha
Helix 28	28	E	228	251	Right-handed alpha
Helix 29	29	E	260	286	Right-handed alpha
Helix 30	30	E	304	312	Right-handed alpha
Helix 31	31	F	60	69	Right-handed alpha
Helix 32	32	F	201	208	Right-handed alpha
Helix 33	33	F	208	221	Right-handed alpha
Helix 34	34	F	228	253	Right-handed alpha
Helix 35	35	F	260	286	Right-handed alpha
Helix 36	36	F	307	312	Right-handed alpha
Helix 37	37	G	60	69	Right-handed alpha
Helix 38	38	G	201	208	Right-handed alpha
Helix 39	39	G	208	221	Right-handed alpha
Helix 40	40	G	228	251	Right-handed alpha
Helix 41	41	G	260	286	Right-handed alpha
Helix 42	42	G	304	312	Right-handed alpha
Helix 43	43	H	60	69	Right-handed alpha
Helix 44	44	H	201	208	Right-handed alpha
Helix 45	45	H	208	221	Right-handed alpha
Helix 46	46	H	228	253	Right-handed alpha
Helix 47	47	H	260	286	Right-handed alpha
Helix 48	48	H	304	312	Right-handed alpha
Helix 49	49	I	60	69	Right-handed alpha
Helix 50	50	I	201	208	Right-handed alpha
Helix 51	51	I	208	221	Right-handed alpha
Helix 52	52	I	228	253	Right-handed alpha
Helix 53	53	I	260	286	Right-handed alpha
Helix 54	54	I	304	312	Right-handed alpha
Helix 55	55	J	60	69	Right-handed alpha
Helix 56	56	J	201	208	Right-handed alpha
Helix 57	57	J	208	221	Right-handed alpha
Helix 58	58	J	228	253	Right-handed alpha
Helix 59	59	J	260	286	Right-handed alpha
Helix 60	60	J	304	312	Right-handed alpha

There are 30 sheets in PDB entry 3UQ4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	86	94	anti-parallel
Strand 3	A	100	111	anti-parallel
Strand 4	A	32	43	anti-parallel
Strand 5	A	13	24	anti-parallel
Strand 6	A	139	147	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	160	162	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	170	174	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	86	94	anti-parallel
Strand 3	B	100	111	anti-parallel
Strand 4	B	32	43	anti-parallel
Strand 5	B	13	24	anti-parallel
Strand 6	B	139	147	parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	187	199	anti-parallel
Strand 4	B	160	162	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	187	199	anti-parallel
Strand 4	B	170	174	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	59	first strand
Strand 2	C	86	94	anti-parallel
Strand 3	C	99	111	anti-parallel
Strand 4	C	32	44	anti-parallel
Strand 5	C	13	27	anti-parallel
Strand 6	C	139	147	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	160	162	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	170	174	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	59	first strand
Strand 2	D	86	94	anti-parallel
Strand 3	D	100	111	anti-parallel
Strand 4	D	32	43	anti-parallel
Strand 5	D	13	24	anti-parallel
Strand 6	D	139	147	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	187	199	anti-parallel
Strand 4	D	160	162	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	187	199	anti-parallel
Strand 4	D	170	174	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	59	first strand
Strand 2	E	86	94	anti-parallel
Strand 3	E	100	111	anti-parallel
Strand 4	E	32	43	anti-parallel
Strand 5	E	13	27	anti-parallel
Strand 6	E	139	147	parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	187	199	anti-parallel
Strand 4	E	160	162	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	187	199	anti-parallel
Strand 4	E	170	174	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	59	first strand
Strand 2	F	86	94	anti-parallel
Strand 3	F	100	111	anti-parallel
Strand 4	F	32	43	anti-parallel
Strand 5	F	13	27	anti-parallel
Strand 6	F	139	147	parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	123	132	anti-parallel
Strand 3	F	187	199	anti-parallel
Strand 4	F	160	162	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	123	132	anti-parallel
Strand 3	F	187	199	anti-parallel
Strand 4	F	170	174	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	59	first strand
Strand 2	G	86	94	anti-parallel
Strand 3	G	100	111	anti-parallel
Strand 4	G	32	43	anti-parallel
Strand 5	G	13	24	anti-parallel
Strand 6	G	139	147	parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	123	132	anti-parallel
Strand 3	G	187	199	anti-parallel
Strand 4	G	160	162	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	123	132	anti-parallel
Strand 3	G	187	199	anti-parallel
Strand 4	G	170	174	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	59	first strand
Strand 2	H	86	94	anti-parallel
Strand 3	H	99	111	anti-parallel
Strand 4	H	32	44	anti-parallel
Strand 5	H	13	24	anti-parallel
Strand 6	H	139	147	parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	78	first strand
Strand 2	H	123	132	anti-parallel
Strand 3	H	187	199	anti-parallel
Strand 4	H	160	162	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	78	first strand
Strand 2	H	123	132	anti-parallel
Strand 3	H	187	199	anti-parallel
Strand 4	H	170	174	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	59	first strand
Strand 2	I	86	94	anti-parallel
Strand 3	I	99	111	anti-parallel
Strand 4	I	32	44	anti-parallel
Strand 5	I	13	27	anti-parallel
Strand 6	I	139	147	parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	78	first strand
Strand 2	I	123	132	anti-parallel
Strand 3	I	187	199	anti-parallel
Strand 4	I	160	162	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	78	first strand
Strand 2	I	123	132	anti-parallel
Strand 3	I	187	199	anti-parallel
Strand 4	I	170	174	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	59	first strand
Strand 2	J	86	94	anti-parallel
Strand 3	J	100	111	anti-parallel
Strand 4	J	32	43	anti-parallel
Strand 5	J	13	27	anti-parallel
Strand 6	J	139	147	parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	78	first strand
Strand 2	J	123	132	anti-parallel
Strand 3	J	187	199	anti-parallel
Strand 4	J	160	162	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	78	first strand
Strand 2	J	123	132	anti-parallel
Strand 3	J	187	199	anti-parallel
Strand 4	J	170	174	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UQ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UQ4