Analysis of interatomic Contacts of Structural Units in PDB entry:
3UQ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UQ5 entry

There are 10 chains in PDB entry 3UQ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 11	ILE 317
B	PRO 11	ILE 317
C	PRO 11	ILE 317
D	PRO 11	ILE 317
E	PRO 11	ILE 317
F	PRO 11	ILE 317
G	PRO 11	ILE 317
H	PRO 11	ILE 317
I	PRO 11	ILE 317
J	PRO 11	ILE 317

There are 64 helices in PDB entry 3UQ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	61	69	Right-handed alpha
Helix 2	2	A	201	207	Right-handed alpha
Helix 3	3	A	209	219	Right-handed alpha
Helix 4	4	A	227	251	Right-handed alpha
Helix 5	5	A	261	284	Right-handed alpha
Helix 6	6	A	296	300	Right-handed 310
Helix 7	7	B	61	69	Right-handed alpha
Helix 8	8	B	201	207	Right-handed alpha
Helix 9	9	B	209	219	Right-handed alpha
Helix 10	10	B	227	251	Right-handed alpha
Helix 11	11	B	261	284	Right-handed alpha
Helix 12	12	B	296	300	Right-handed 310
Helix 13	13	C	61	69	Right-handed alpha
Helix 14	14	C	201	207	Right-handed alpha
Helix 15	15	C	209	219	Right-handed alpha
Helix 16	16	C	227	251	Right-handed alpha
Helix 17	17	C	261	284	Right-handed alpha
Helix 18	18	C	296	300	Right-handed 310
Helix 19	19	D	61	69	Right-handed alpha
Helix 20	20	D	154	158	Right-handed 310
Helix 21	21	D	201	207	Right-handed alpha
Helix 22	22	D	209	219	Right-handed alpha
Helix 23	23	D	227	251	Right-handed alpha
Helix 24	24	D	261	281	Right-handed alpha
Helix 25	25	D	296	300	Right-handed 310
Helix 26	26	E	61	69	Right-handed alpha
Helix 27	27	E	201	207	Right-handed alpha
Helix 28	28	E	209	219	Right-handed alpha
Helix 29	29	E	227	251	Right-handed alpha
Helix 30	30	E	261	284	Right-handed alpha
Helix 31	31	E	296	300	Right-handed 310
Helix 32	32	F	61	69	Right-handed alpha
Helix 33	33	F	201	207	Right-handed alpha
Helix 34	34	F	209	219	Right-handed alpha
Helix 35	35	F	227	251	Right-handed alpha
Helix 36	36	F	261	284	Right-handed alpha
Helix 37	37	F	296	300	Right-handed 310
Helix 38	38	G	61	69	Right-handed alpha
Helix 39	39	G	201	207	Right-handed alpha
Helix 40	40	G	209	219	Right-handed alpha
Helix 41	41	G	227	251	Right-handed alpha
Helix 42	42	G	261	284	Right-handed alpha
Helix 43	43	G	296	300	Right-handed 310
Helix 44	44	G	304	308	Right-handed 310
Helix 45	45	H	61	69	Right-handed alpha
Helix 46	46	H	201	207	Right-handed alpha
Helix 47	47	H	209	219	Right-handed alpha
Helix 48	48	H	227	251	Right-handed alpha
Helix 49	49	H	261	284	Right-handed alpha
Helix 50	50	H	296	300	Right-handed 310
Helix 51	51	I	61	69	Right-handed alpha
Helix 52	52	I	154	158	Right-handed 310
Helix 53	53	I	201	207	Right-handed alpha
Helix 54	54	I	209	219	Right-handed alpha
Helix 55	55	I	227	251	Right-handed alpha
Helix 56	56	I	261	284	Right-handed alpha
Helix 57	57	I	296	300	Right-handed 310
Helix 58	58	J	61	69	Right-handed alpha
Helix 59	59	J	201	207	Right-handed alpha
Helix 60	60	J	209	219	Right-handed alpha
Helix 61	61	J	227	251	Right-handed alpha
Helix 62	62	J	261	284	Right-handed alpha
Helix 63	63	J	296	300	Right-handed 310
Helix 64	64	J	304	308	Right-handed 310

There are 40 sheets in PDB entry 3UQ5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	91	94	anti-parallel
Strand 3	A	100	111	anti-parallel
Strand 4	A	86	87	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	91	94	anti-parallel
Strand 3	A	100	111	anti-parallel
Strand 4	A	32	43	anti-parallel
Strand 5	A	13	27	anti-parallel
Strand 6	A	139	147	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	160	162	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	170	174	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	91	94	anti-parallel
Strand 3	B	100	111	anti-parallel
Strand 4	B	86	87	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	91	94	anti-parallel
Strand 3	B	100	111	anti-parallel
Strand 4	B	32	43	anti-parallel
Strand 5	B	13	27	anti-parallel
Strand 6	B	139	147	parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	187	199	anti-parallel
Strand 4	B	160	162	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	187	199	anti-parallel
Strand 4	B	170	174	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	59	first strand
Strand 2	C	91	94	anti-parallel
Strand 3	C	100	111	anti-parallel
Strand 4	C	86	87	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	59	first strand
Strand 2	C	91	94	anti-parallel
Strand 3	C	100	111	anti-parallel
Strand 4	C	32	43	anti-parallel
Strand 5	C	13	27	anti-parallel
Strand 6	C	139	147	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	160	162	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	170	174	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	59	first strand
Strand 2	D	91	94	anti-parallel
Strand 3	D	100	111	anti-parallel
Strand 4	D	86	87	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	59	first strand
Strand 2	D	91	94	anti-parallel
Strand 3	D	100	111	anti-parallel
Strand 4	D	32	43	anti-parallel
Strand 5	D	13	27	anti-parallel
Strand 6	D	139	147	parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	187	199	anti-parallel
Strand 4	D	160	162	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	187	199	anti-parallel
Strand 4	D	170	174	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	59	first strand
Strand 2	E	91	94	anti-parallel
Strand 3	E	100	111	anti-parallel
Strand 4	E	86	87	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	59	first strand
Strand 2	E	91	94	anti-parallel
Strand 3	E	100	111	anti-parallel
Strand 4	E	32	43	anti-parallel
Strand 5	E	13	27	anti-parallel
Strand 6	E	139	147	parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	187	199	anti-parallel
Strand 4	E	160	162	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	187	199	anti-parallel
Strand 4	E	170	174	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	59	first strand
Strand 2	F	91	94	anti-parallel
Strand 3	F	100	111	anti-parallel
Strand 4	F	86	87	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	59	first strand
Strand 2	F	91	94	anti-parallel
Strand 3	F	100	111	anti-parallel
Strand 4	F	32	43	anti-parallel
Strand 5	F	13	27	anti-parallel
Strand 6	F	139	147	parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	123	132	anti-parallel
Strand 3	F	187	199	anti-parallel
Strand 4	F	160	162	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	123	132	anti-parallel
Strand 3	F	187	199	anti-parallel
Strand 4	F	170	174	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	59	first strand
Strand 2	G	91	94	anti-parallel
Strand 3	G	100	111	anti-parallel
Strand 4	G	86	87	anti-parallel

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There are 6 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	59	first strand
Strand 2	G	91	94	anti-parallel
Strand 3	G	100	111	anti-parallel
Strand 4	G	32	43	anti-parallel
Strand 5	G	13	27	anti-parallel
Strand 6	G	139	147	parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	123	132	anti-parallel
Strand 3	G	187	199	anti-parallel
Strand 4	G	160	162	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	123	132	anti-parallel
Strand 3	G	187	199	anti-parallel
Strand 4	G	170	174	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	59	first strand
Strand 2	H	91	94	anti-parallel
Strand 3	H	100	111	anti-parallel
Strand 4	H	86	87	anti-parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	59	first strand
Strand 2	H	91	94	anti-parallel
Strand 3	H	100	111	anti-parallel
Strand 4	H	32	43	anti-parallel
Strand 5	H	13	27	anti-parallel
Strand 6	H	139	147	parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	78	first strand
Strand 2	H	123	132	anti-parallel
Strand 3	H	187	199	anti-parallel
Strand 4	H	160	162	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	78	first strand
Strand 2	H	123	132	anti-parallel
Strand 3	H	187	199	anti-parallel
Strand 4	H	170	174	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	59	first strand
Strand 2	I	91	94	anti-parallel
Strand 3	I	100	111	anti-parallel
Strand 4	I	86	87	anti-parallel

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There are 6 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	59	first strand
Strand 2	I	91	94	anti-parallel
Strand 3	I	100	111	anti-parallel
Strand 4	I	32	43	anti-parallel
Strand 5	I	13	27	anti-parallel
Strand 6	I	139	147	parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	78	first strand
Strand 2	I	123	132	anti-parallel
Strand 3	I	187	199	anti-parallel
Strand 4	I	160	162	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	78	first strand
Strand 2	I	123	132	anti-parallel
Strand 3	I	187	199	anti-parallel
Strand 4	I	170	174	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	59	first strand
Strand 2	J	91	94	anti-parallel
Strand 3	J	100	111	anti-parallel
Strand 4	J	86	87	anti-parallel

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There are 6 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	59	first strand
Strand 2	J	91	94	anti-parallel
Strand 3	J	100	111	anti-parallel
Strand 4	J	32	43	anti-parallel
Strand 5	J	13	27	anti-parallel
Strand 6	J	139	147	parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	78	first strand
Strand 2	J	123	132	anti-parallel
Strand 3	J	187	199	anti-parallel
Strand 4	J	160	162	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	78	first strand
Strand 2	J	123	132	anti-parallel
Strand 3	J	187	199	anti-parallel
Strand 4	J	170	174	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UQ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UQ5