Analysis of interatomic Contacts of Structural Units in PDB entry:
3UQS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UQS entry

There are 3 chains in PDB entry 3UQS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2GLY 488
B
 PRO 3GLY 488
C
 PRO 5GLY 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 3UQS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 68Right-handed alpha
Helix 2
2
A
69 72Right-handed 310
Helix 3
3
A
79 98Right-handed alpha
Helix 4
4
A
105 113Right-handed alpha
Helix 5
5
A
126 131Right-handed 310
Helix 6
6
A
137 153Right-handed alpha
Helix 7
7
A
172 177Right-handed alpha
Helix 8
8
A
188 209Right-handed alpha
Helix 9
9
A
220 233Right-handed alpha
Helix 10
10
A
246 250Right-handed 310
Helix 11
11
A
251 265Right-handed alpha
Helix 12
12
A
268 281Right-handed alpha
Helix 13
13
A
303 326Right-handed alpha
Helix 14
14
A
328 335Right-handed alpha
Helix 15
15
A
354 365Right-handed alpha
Helix 16
16
A
407 416Right-handed alpha
Helix 17
17
A
436 449Right-handed alpha
Helix 18
18
A
451 466Right-handed alpha
Helix 19
19
A
477 487Right-handed alpha
Helix 20
20
B
58 68Right-handed alpha
Helix 21
21
B
69 72Right-handed 310
Helix 22
22
B
79 96Right-handed alpha
Helix 23
23
B
105 113Right-handed alpha
Helix 24
24
B
126 131Right-handed 310
Helix 25
25
B
137 153Right-handed alpha
Helix 26
26
B
172 177Right-handed alpha
Helix 27
27
B
188 209Right-handed alpha
Helix 28
28
B
220 233Right-handed alpha
Helix 29
29
B
245 250Right-handed alpha
Helix 30
30
B
251 265Right-handed alpha
Helix 31
31
B
268 281Right-handed alpha
Helix 32
32
B
304 326Right-handed alpha
Helix 33
33
B
328 335Right-handed alpha
Helix 34
34
B
354 365Right-handed alpha
Helix 35
35
B
407 416Right-handed alpha
Helix 36
36
B
436 449Right-handed alpha
Helix 37
37
B
451 468Right-handed alpha
Helix 38
38
B
477 488Right-handed alpha
Helix 39
39
C
58 68Right-handed alpha
Helix 40
40
C
69 72Right-handed 310
Helix 41
41
C
79 98Right-handed alpha
Helix 42
42
C
105 113Right-handed alpha
Helix 43
43
C
126 131Right-handed 310
Helix 44
44
C
137 153Right-handed alpha
Helix 45
45
C
172 177Right-handed alpha
Helix 46
46
C
188 209Right-handed alpha
Helix 47
47
C
220 234Right-handed alpha
Helix 48
48
C
246 250Right-handed 310
Helix 49
49
C
251 265Right-handed alpha
Helix 50
50
C
268 281Right-handed alpha
Helix 51
51
C
303 326Right-handed alpha
Helix 52
52
C
328 335Right-handed alpha
Helix 53
53
C
354 365Right-handed alpha
Helix 54
54
C
407 416Right-handed alpha
Helix 55
55
C
437 449Right-handed alpha
Helix 56
56
C
451 466Right-handed alpha
Helix 57
57
C
477 487Right-handed alpha
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There are 15 sheets in PDB entry 3UQS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
12 17anti-parallel
Strand 3
A
290 294anti-parallel
Strand 4
A
283 286anti-parallel
Strand 5
A
160 165parallel
Strand 6
A
183 186anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
417 423anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
169 170anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
344 349anti-parallel
Strand 3
A
336 341anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 390first strand
Strand 2
A
393 398anti-parallel
Strand 3
A
401 405anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
12 17anti-parallel
Strand 3
B
290 294anti-parallel
Strand 4
B
283 286anti-parallel
Strand 5
B
160 165parallel
Strand 6
B
183 186anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
417 423anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
169 170anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 239first strand
Strand 2
B
344 349anti-parallel
Strand 3
B
336 341anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
389 390first strand
Strand 2
B
393 398anti-parallel
Strand 3
B
401 405anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 9first strand
Strand 2
C
12 17anti-parallel
Strand 3
C
290 294anti-parallel
Strand 4
C
283 286anti-parallel
Strand 5
C
160 165parallel
Strand 6
C
183 186anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 31first strand
Strand 2
C
417 423anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 44first strand
Strand 2
C
169 170anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
237 239first strand
Strand 2
C
344 349anti-parallel
Strand 3
C
336 341anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
389 390first strand
Strand 2
C
393 398anti-parallel
Strand 3
C
401 405anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il