Analysis of interatomic Contacts of Structural Units in PDB entry:
3UTO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UTO entry

There are 2 chains in PDB entry 3UTO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 5	THR 570
B	PRO 5	THR 570

There are 42 helices in PDB entry 3UTO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	128	133	Right-handed 310
Helix 2	2	A	135	140	Right-handed alpha
Helix 3	3	A	151	154	Right-handed 310
Helix 4	4	A	191	208	Right-handed alpha
Helix 5	5	A	237	243	Right-handed alpha
Helix 6	6	A	251	271	Right-handed alpha
Helix 7	7	A	279	281	Right-handed 310
Helix 8	8	A	316	320	Right-handed 310
Helix 9	9	A	321	326	Right-handed alpha
Helix 10	10	A	331	349	Right-handed alpha
Helix 11	11	A	357	367	Right-handed alpha
Helix 12	12	A	374	378	Right-handed 310
Helix 13	13	A	381	390	Right-handed alpha
Helix 14	14	A	395	399	Right-handed 310
Helix 15	15	A	401	408	Right-handed alpha
Helix 16	16	A	424	427	Right-handed 310
Helix 17	17	A	428	439	Right-handed alpha
Helix 18	18	A	447	455	Right-handed 310
Helix 19	19	A	456	462	Right-handed 310
Helix 20	20	A	474	479	Right-handed 310
Helix 21	21	A	543	547	Right-handed 310
Helix 22	22	B	100	104	Right-handed 310
Helix 23	23	B	128	133	Right-handed 310
Helix 24	24	B	135	140	Right-handed alpha
Helix 25	25	B	151	154	Right-handed 310
Helix 26	26	B	191	208	Right-handed alpha
Helix 27	27	B	237	243	Right-handed alpha
Helix 28	28	B	251	271	Right-handed alpha
Helix 29	29	B	279	281	Right-handed 310
Helix 30	30	B	316	320	Right-handed 310
Helix 31	31	B	321	326	Right-handed alpha
Helix 32	32	B	331	349	Right-handed alpha
Helix 33	33	B	357	367	Right-handed alpha
Helix 34	34	B	381	390	Right-handed alpha
Helix 35	35	B	395	399	Right-handed 310
Helix 36	36	B	401	408	Right-handed alpha
Helix 37	37	B	424	427	Right-handed 310
Helix 38	38	B	428	439	Right-handed alpha
Helix 39	39	B	447	455	Right-handed 310
Helix 40	40	B	456	462	Right-handed 310
Helix 41	41	B	474	479	Right-handed 310
Helix 42	42	B	543	547	Right-handed 310

There are 22 sheets in PDB entry 3UTO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	18	first strand
Strand 2	A	23	28	anti-parallel
Strand 3	A	63	66	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	59	first strand
Strand 2	A	40	47	anti-parallel
Strand 3	A	74	83	anti-parallel
Strand 4	A	86	87	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	59	first strand
Strand 2	A	40	47	anti-parallel
Strand 3	A	74	83	anti-parallel
Strand 4	A	97	98	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	112	first strand
Strand 2	A	118	119	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	165	first strand
Strand 2	A	168	175	anti-parallel
Strand 3	A	181	188	anti-parallel
Strand 4	A	225	231	anti-parallel
Strand 5	A	216	221	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	422	423	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	302	303	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	285	first strand
Strand 2	A	293	295	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	313	first strand
Strand 2	A	468	472	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	484	first strand
Strand 2	A	497	504	anti-parallel
Strand 3	A	534	539	anti-parallel
Strand 4	A	526	531	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	492	first strand
Strand 2	A	559	570	parallel
Strand 3	A	548	556	anti-parallel
Strand 4	A	510	515	anti-parallel
Strand 5	A	518	519	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	18	first strand
Strand 2	B	23	28	anti-parallel
Strand 3	B	63	66	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	59	first strand
Strand 2	B	40	46	anti-parallel
Strand 3	B	74	83	anti-parallel
Strand 4	B	86	87	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	59	first strand
Strand 2	B	40	46	anti-parallel
Strand 3	B	74	83	anti-parallel
Strand 4	B	97	98	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	112	first strand
Strand 2	B	118	119	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	165	first strand
Strand 2	B	168	175	anti-parallel
Strand 3	B	181	188	anti-parallel
Strand 4	B	225	231	anti-parallel
Strand 5	B	216	221	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	422	423	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	274	first strand
Strand 2	B	302	303	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	293	295	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	313	first strand
Strand 2	B	468	472	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	481	484	first strand
Strand 2	B	497	504	anti-parallel
Strand 3	B	534	539	anti-parallel
Strand 4	B	526	531	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	559	569	parallel
Strand 3	B	548	556	anti-parallel
Strand 4	B	510	515	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UTO

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UTO