Analysis of interatomic Contacts of Structural Units in PDB entry:
3UTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UTP entry

There are 4 chains in PDB entry 3UTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 LYS 2PRO 200
E
 ASP 1ASP 246
K
 LYS 2PRO 202
L
 ASP 1ASP 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3UTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
80 84Right-handed 310
Helix 2
2
D
164 167Right-handed 310
Helix 3
3
E
83 87Right-handed 310
Helix 4
4
E
96 102Right-handed alpha
Helix 5
5
E
118 122Right-handed 310
Helix 6
6
E
133 140Right-handed alpha
Helix 7
7
E
200 205Right-handed alpha
Helix 8
8
K
80 84Right-handed 310
Helix 9
9
K
164 167Right-handed 310
Helix 10
10
L
83 87Right-handed 310
Helix 11
11
L
96 101Right-handed alpha
Helix 12
12
L
118 122Right-handed 310
Helix 13
13
L
133 141Right-handed alpha
Helix 14
14
L
200 205Right-handed alpha
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There are 19 sheets in PDB entry 3UTP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 6first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
71 76anti-parallel
Strand 4
D
61 66anti-parallel
Strand 5
D
54 58anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
105 110parallel
Strand 3
D
85 92anti-parallel
Strand 4
D
32 38anti-parallel
Strand 5
D
44 51anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
105 110parallel
Strand 3
D
85 92anti-parallel
Strand 4
D
100 101anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
153 156first strand
Strand 2
D
172 177anti-parallel
Strand 3
D
133 137anti-parallel
Strand 4
D
119 125anti-parallel
Strand 5
E
126 131anti-parallel
Strand 6
E
142 152anti-parallel
Strand 7
E
190 199anti-parallel
Strand 8
E
172 174anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
153 156first strand
Strand 2
D
172 177anti-parallel
Strand 3
D
133 137anti-parallel
Strand 4
D
119 125anti-parallel
Strand 5
E
126 131anti-parallel
Strand 6
E
142 152anti-parallel
Strand 7
E
190 199anti-parallel
Strand 8
E
179 180anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
161 163first strand
Strand 2
D
168 170anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 7first strand
Strand 2
E
19 24anti-parallel
Strand 3
E
74 79anti-parallel
Strand 4
E
65 71anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
111 116parallel
Strand 3
E
88 95anti-parallel
Strand 4
E
31 38anti-parallel
Strand 5
E
42 50anti-parallel
Strand 6
E
53 56anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
111 116parallel
Strand 3
E
88 95anti-parallel
Strand 4
E
106 107anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
166 167first strand
Strand 2
E
157 163anti-parallel
Strand 3
E
209 216anti-parallel
Strand 4
E
235 242anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
11 14first strand
Strand 2
K
105 110parallel
Strand 3
K
85 93anti-parallel
Strand 4
K
30 38anti-parallel
Strand 5
K
44 51anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
11 14first strand
Strand 2
K
105 110parallel
Strand 3
K
85 93anti-parallel
Strand 4
K
100 101anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
19 24first strand
Strand 2
K
71 76anti-parallel
Strand 3
K
61 66anti-parallel
Strand 4
K
54 58anti-parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
154 155first strand
Strand 2
K
168 176anti-parallel
Strand 3
K
133 137anti-parallel
Strand 4
K
119 125anti-parallel
Strand 5
L
126 131anti-parallel
Strand 6
L
142 152anti-parallel
Strand 7
L
190 199anti-parallel
Strand 8
L
172 174anti-parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
159 163first strand
Strand 2
K
168 176anti-parallel
Strand 3
K
133 137anti-parallel
Strand 4
K
119 125anti-parallel
Strand 5
L
126 131anti-parallel
Strand 6
L
142 152anti-parallel
Strand 7
L
190 199anti-parallel
Strand 8
L
179 180anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 7first strand
Strand 2
L
19 24anti-parallel
Strand 3
L
74 79anti-parallel
Strand 4
L
65 71anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
111 116parallel
Strand 3
L
88 95anti-parallel
Strand 4
L
31 38anti-parallel
Strand 5
L
42 50anti-parallel
Strand 6
L
53 56anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
111 116parallel
Strand 3
L
88 95anti-parallel
Strand 4
L
106 107anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
166 168first strand
Strand 2
L
157 163anti-parallel
Strand 3
L
209 216anti-parallel
Strand 4
L
235 242anti-parallel
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