Analysis of interatomic Contacts of Structural Units in PDB entry:
3UUB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UUB entry

There are 4 chains in PDB entry 3UUB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	PHE 315
B	VAL 5	PHE 315
C	VAL 5	PHE 315
D	VAL 5	LEU 305

There are108 helices in PDB entry 3UUB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	50	53	Right-handed 310
Helix 2	2	A	55	60	Right-handed alpha
Helix 3	3	A	67	71	Right-handed 310
Helix 4	4	A	115	119	Right-handed 310
Helix 5	5	A	146	149	Right-handed 310
Helix 6	6	A	196	201	Right-handed alpha
Helix 7	7	A	201	213	Right-handed alpha
Helix 8	8	A	214	218	Right-handed 310
Helix 9	9	A	220	245	Right-handed alpha
Helix 10	10	A	253	282	Right-handed alpha
Helix 11	11	A	284	315	Right-handed alpha
Helix 12	12	B	50	53	Right-handed 310
Helix 13	13	B	55	60	Right-handed alpha
Helix 14	14	B	67	71	Right-handed 310
Helix 15	15	B	146	149	Right-handed 310
Helix 16	16	B	196	201	Right-handed alpha
Helix 17	17	B	201	213	Right-handed alpha
Helix 18	18	B	214	218	Right-handed 310
Helix 19	19	B	220	245	Right-handed alpha
Helix 20	20	B	253	282	Right-handed alpha
Helix 21	21	B	284	315	Right-handed alpha
Helix 22	22	C	50	53	Right-handed 310
Helix 23	23	C	55	60	Right-handed alpha
Helix 24	24	C	67	71	Right-handed 310
Helix 25	25	C	115	119	Right-handed 310
Helix 26	26	C	146	149	Right-handed 310
Helix 27	27	C	196	201	Right-handed alpha
Helix 28	28	C	201	213	Right-handed alpha
Helix 29	29	C	214	218	Right-handed 310
Helix 30	30	C	220	245	Right-handed alpha
Helix 31	31	C	253	282	Right-handed alpha
Helix 32	32	C	284	315	Right-handed alpha
Helix 33	33	D	50	53	Right-handed 310
Helix 34	34	D	55	60	Right-handed alpha
Helix 35	35	D	67	71	Right-handed 310
Helix 36	36	D	115	119	Right-handed 310
Helix 37	37	D	146	149	Right-handed 310
Helix 38	38	D	196	201	Right-handed alpha
Helix 39	39	D	201	213	Right-handed alpha
Helix 40	40	D	214	218	Right-handed 310
Helix 41	41	D	220	245	Right-handed alpha
Helix 42	42	D	253	282	Right-handed alpha
Helix 43	43	D	284	315	Right-handed alpha
Helix 44	44	E	50	53	Right-handed 310
Helix 45	45	E	55	60	Right-handed alpha
Helix 46	46	E	67	71	Right-handed 310
Helix 47	47	E	115	119	Right-handed 310
Helix 48	48	E	146	149	Right-handed 310
Helix 49	49	E	196	201	Right-handed alpha
Helix 50	50	E	201	213	Right-handed alpha
Helix 51	51	E	214	218	Right-handed 310
Helix 52	52	E	220	245	Right-handed alpha
Helix 53	53	E	253	282	Right-handed alpha
Helix 54	54	E	284	315	Right-handed alpha
Helix 55	55	F	50	53	Right-handed 310
Helix 56	56	F	55	60	Right-handed alpha
Helix 57	57	F	67	71	Right-handed 310
Helix 58	58	F	115	119	Right-handed 310
Helix 59	59	F	146	149	Right-handed 310
Helix 60	60	F	196	201	Right-handed alpha
Helix 61	61	F	201	213	Right-handed alpha
Helix 62	62	F	214	218	Right-handed 310
Helix 63	63	F	220	245	Right-handed alpha
Helix 64	64	F	253	282	Right-handed alpha
Helix 65	65	F	284	315	Right-handed alpha
Helix 66	66	G	50	53	Right-handed 310
Helix 67	67	G	55	60	Right-handed alpha
Helix 68	68	G	67	71	Right-handed 310
Helix 69	69	G	115	119	Right-handed 310
Helix 70	70	G	146	149	Right-handed 310
Helix 71	71	G	196	201	Right-handed alpha
Helix 72	72	G	201	213	Right-handed alpha
Helix 73	73	G	214	218	Right-handed 310
Helix 74	74	G	220	245	Right-handed alpha
Helix 75	75	G	253	282	Right-handed alpha
Helix 76	76	G	284	315	Right-handed alpha
Helix 77	77	H	50	53	Right-handed 310
Helix 78	78	H	55	60	Right-handed alpha
Helix 79	79	H	67	71	Right-handed 310
Helix 80	80	H	115	119	Right-handed 310
Helix 81	81	H	146	149	Right-handed 310
Helix 82	82	H	196	201	Right-handed alpha
Helix 83	83	H	201	213	Right-handed alpha
Helix 84	84	H	214	218	Right-handed 310
Helix 85	85	H	220	245	Right-handed alpha
Helix 86	86	H	253	282	Right-handed alpha
Helix 87	87	H	284	315	Right-handed alpha
Helix 88	88	I	50	53	Right-handed 310
Helix 89	89	I	67	71	Right-handed 310
Helix 90	90	I	115	119	Right-handed 310
Helix 91	91	I	146	149	Right-handed 310
Helix 92	92	I	196	201	Right-handed alpha
Helix 93	93	I	201	213	Right-handed alpha
Helix 94	94	I	214	218	Right-handed 310
Helix 95	95	I	220	245	Right-handed alpha
Helix 96	96	I	253	282	Right-handed alpha
Helix 97	97	I	284	315	Right-handed alpha
Helix 98	98	J	50	53	Right-handed 310
Helix 99	99	J	55	60	Right-handed alpha
Helix 100	100	J	67	71	Right-handed 310
Helix 101	101	J	115	119	Right-handed 310
Helix 102	102	J	146	149	Right-handed 310
Helix 103	103	J	196	201	Right-handed alpha
Helix 104	104	J	201	213	Right-handed alpha
Helix 105	105	J	214	218	Right-handed 310
Helix 106	106	J	220	245	Right-handed alpha
Helix 107	107	J	253	282	Right-handed alpha
Helix 108	108	J	284	315	Right-handed alpha

There are 30 sheets in PDB entry 3UUB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	86	94	anti-parallel
Strand 3	A	99	111	anti-parallel
Strand 4	A	36	48	anti-parallel
Strand 5	A	16	31	anti-parallel
Strand 6	A	140	144	parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	86	94	anti-parallel
Strand 3	A	99	111	anti-parallel
Strand 4	A	36	48	anti-parallel
Strand 5	A	16	31	anti-parallel
Strand 6	A	150	151	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	133	anti-parallel
Strand 3	A	179	192	anti-parallel
Strand 4	A	160	176	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	86	94	anti-parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	36	48	anti-parallel
Strand 5	B	16	31	anti-parallel
Strand 6	B	140	144	parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	86	94	anti-parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	36	48	anti-parallel
Strand 5	B	16	31	anti-parallel
Strand 6	B	150	151	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	123	133	anti-parallel
Strand 3	B	179	192	anti-parallel
Strand 4	B	160	176	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	86	94	anti-parallel
Strand 3	C	99	111	anti-parallel
Strand 4	C	36	48	anti-parallel
Strand 5	C	16	31	anti-parallel
Strand 6	C	140	144	parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	86	94	anti-parallel
Strand 3	C	99	111	anti-parallel
Strand 4	C	36	48	anti-parallel
Strand 5	C	16	31	anti-parallel
Strand 6	C	150	151	parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	123	133	anti-parallel
Strand 3	C	179	192	anti-parallel
Strand 4	C	160	176	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	65	first strand
Strand 2	D	86	94	anti-parallel
Strand 3	D	99	111	anti-parallel
Strand 4	D	36	48	anti-parallel
Strand 5	D	16	31	anti-parallel
Strand 6	D	140	144	parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	65	first strand
Strand 2	D	86	94	anti-parallel
Strand 3	D	99	111	anti-parallel
Strand 4	D	36	48	anti-parallel
Strand 5	D	16	31	anti-parallel
Strand 6	D	150	151	parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	123	133	anti-parallel
Strand 3	D	180	192	anti-parallel
Strand 4	D	160	175	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	65	first strand
Strand 2	E	86	94	anti-parallel
Strand 3	E	99	111	anti-parallel
Strand 4	E	36	48	anti-parallel
Strand 5	E	16	31	anti-parallel
Strand 6	E	140	144	parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	65	first strand
Strand 2	E	86	94	anti-parallel
Strand 3	E	99	111	anti-parallel
Strand 4	E	36	48	anti-parallel
Strand 5	E	16	31	anti-parallel
Strand 6	E	150	151	parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	78	first strand
Strand 2	E	123	133	anti-parallel
Strand 3	E	179	192	anti-parallel
Strand 4	E	160	176	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	65	first strand
Strand 2	F	86	94	anti-parallel
Strand 3	F	99	111	anti-parallel
Strand 4	F	36	48	anti-parallel
Strand 5	F	16	31	anti-parallel
Strand 6	F	140	144	parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	65	first strand
Strand 2	F	86	94	anti-parallel
Strand 3	F	99	111	anti-parallel
Strand 4	F	36	48	anti-parallel
Strand 5	F	16	31	anti-parallel
Strand 6	F	150	151	parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	123	133	anti-parallel
Strand 3	F	179	192	anti-parallel
Strand 4	F	160	176	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	65	first strand
Strand 2	G	86	94	anti-parallel
Strand 3	G	99	111	anti-parallel
Strand 4	G	36	48	anti-parallel
Strand 5	G	16	31	anti-parallel
Strand 6	G	140	144	parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	65	first strand
Strand 2	G	86	94	anti-parallel
Strand 3	G	99	111	anti-parallel
Strand 4	G	36	48	anti-parallel
Strand 5	G	16	31	anti-parallel
Strand 6	G	150	151	parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	G	123	133	anti-parallel
Strand 3	G	179	192	anti-parallel
Strand 4	G	160	176	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	86	94	first strand
Strand 2	H	99	111	anti-parallel
Strand 3	H	36	48	anti-parallel
Strand 4	H	16	31	anti-parallel
Strand 5	H	140	144	parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	86	94	first strand
Strand 2	H	99	111	anti-parallel
Strand 3	H	36	48	anti-parallel
Strand 4	H	16	31	anti-parallel
Strand 5	H	150	151	parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	78	first strand
Strand 2	H	123	133	anti-parallel
Strand 3	H	179	192	anti-parallel
Strand 4	H	160	176	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	64	65	first strand
Strand 2	I	86	94	anti-parallel
Strand 3	I	99	111	anti-parallel
Strand 4	I	36	48	anti-parallel
Strand 5	I	16	31	anti-parallel
Strand 6	I	140	144	parallel

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There are 6 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	64	65	first strand
Strand 2	I	86	94	anti-parallel
Strand 3	I	99	111	anti-parallel
Strand 4	I	36	48	anti-parallel
Strand 5	I	16	31	anti-parallel
Strand 6	I	150	151	parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	77	78	first strand
Strand 2	I	123	133	anti-parallel
Strand 3	I	179	192	anti-parallel
Strand 4	I	160	176	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	64	65	first strand
Strand 2	J	86	94	anti-parallel
Strand 3	J	99	111	anti-parallel
Strand 4	J	36	48	anti-parallel
Strand 5	J	16	31	anti-parallel
Strand 6	J	140	144	parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	64	65	first strand
Strand 2	J	86	94	anti-parallel
Strand 3	J	99	111	anti-parallel
Strand 4	J	36	48	anti-parallel
Strand 5	J	16	31	anti-parallel
Strand 6	J	150	151	parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	77	78	first strand
Strand 2	J	123	133	anti-parallel
Strand 3	J	179	192	anti-parallel
Strand 4	J	160	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UUB

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UUB