Analysis of interatomic Contacts of Structural Units in PDB entry:
3UVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UVA entry

There are 4 chains in PDB entry 3UVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ARG 417
B
 SER 2ARG 417
C
 SER 2ARG 417
D
 LYS 4GLN 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 3UVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 16Right-handed alpha
Helix 2
2
A
20 31Right-handed alpha
Helix 3
3
A
38 40Right-handed 310
Helix 4
4
A
69 83Right-handed alpha
Helix 5
5
A
95 97Right-handed 310
Helix 6
6
A
105 109Right-handed 310
Helix 7
7
A
110 113Right-handed 310
Helix 8
8
A
114 124Right-handed alpha
Helix 9
9
A
137 141Right-handed 310
Helix 10
10
A
150 176Right-handed alpha
Helix 11
11
A
196 211Right-handed alpha
Helix 12
12
A
240 251Right-handed alpha
Helix 13
13
A
268 276Right-handed alpha
Helix 14
14
A
301 314Right-handed alpha
Helix 15
15
A
332 353Right-handed alpha
Helix 16
16
A
355 366Right-handed alpha
Helix 17
17
A
367 378Right-handed alpha
Helix 18
18
A
382 394Right-handed alpha
Helix 19
19
A
401 413Right-handed alpha
Helix 20
20
B
3 16Right-handed alpha
Helix 21
21
B
20 29Right-handed alpha
Helix 22
22
B
37 42Right-handed alpha
Helix 23
23
B
69 83Right-handed alpha
Helix 24
24
B
95 97Right-handed 310
Helix 25
25
B
110 113Right-handed 310
Helix 26
26
B
114 124Right-handed alpha
Helix 27
27
B
137 141Right-handed 310
Helix 28
28
B
150 176Right-handed alpha
Helix 29
29
B
196 213Right-handed alpha
Helix 30
30
B
240 251Right-handed alpha
Helix 31
31
B
268 277Right-handed alpha
Helix 32
32
B
301 314Right-handed alpha
Helix 33
33
B
332 353Right-handed alpha
Helix 34
34
B
355 366Right-handed alpha
Helix 35
35
B
367 379Right-handed alpha
Helix 36
36
B
382 394Right-handed alpha
Helix 37
37
B
401 413Right-handed alpha
Helix 38
38
C
3 16Right-handed alpha
Helix 39
39
C
20 29Right-handed alpha
Helix 40
40
C
38 40Right-handed 310
Helix 41
41
C
69 84Right-handed alpha
Helix 42
42
C
95 97Right-handed 310
Helix 43
43
C
105 109Right-handed 310
Helix 44
44
C
110 113Right-handed 310
Helix 45
45
C
114 125Right-handed alpha
Helix 46
46
C
137 141Right-handed 310
Helix 47
47
C
150 176Right-handed alpha
Helix 48
48
C
196 211Right-handed alpha
Helix 49
49
C
240 252Right-handed alpha
Helix 50
50
C
268 279Right-handed alpha
Helix 51
51
C
301 314Right-handed alpha
Helix 52
52
C
332 353Right-handed alpha
Helix 53
53
C
355 365Right-handed alpha
Helix 54
54
C
367 378Right-handed alpha
Helix 55
55
C
379 381Right-handed 310
Helix 56
56
C
382 393Right-handed alpha
Helix 57
57
C
401 413Right-handed alpha
Helix 58
58
D
5 16Right-handed alpha
Helix 59
59
D
20 31Right-handed alpha
Helix 60
60
D
38 40Right-handed 310
Helix 61
61
D
69 84Right-handed alpha
Helix 62
62
D
95 97Right-handed 310
Helix 63
63
D
105 109Right-handed 310
Helix 64
64
D
110 113Right-handed 310
Helix 65
65
D
114 125Right-handed alpha
Helix 66
66
D
137 141Right-handed 310
Helix 67
67
D
150 176Right-handed alpha
Helix 68
68
D
197 211Right-handed alpha
Helix 69
69
D
240 252Right-handed alpha
Helix 70
70
D
271 277Right-handed alpha
Helix 71
71
D
301 314Right-handed alpha
Helix 72
72
D
332 353Right-handed alpha
Helix 73
73
D
355 366Right-handed alpha
Helix 74
74
D
367 378Right-handed alpha
Helix 75
75
D
379 381Right-handed 310
Helix 76
76
D
382 394Right-handed alpha
Helix 77
77
D
401 416Right-handed alpha
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There are 12 sheets in PDB entry 3UVA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
89 93parallel
Strand 3
A
127 131parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 183first strand
Strand 2
A
220 225parallel
Strand 3
A
254 258parallel
Strand 4
A
282 286parallel
Strand 5
A
320 324parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
236 237anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
89 93parallel
Strand 3
B
127 131parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 184first strand
Strand 2
B
220 225parallel
Strand 3
B
254 258parallel
Strand 4
B
282 286parallel
Strand 5
B
320 324parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 189first strand
Strand 2
B
236 237anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 36first strand
Strand 2
C
89 93parallel
Strand 3
C
127 131parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 183first strand
Strand 2
C
220 225parallel
Strand 3
C
254 258parallel
Strand 4
C
282 286parallel
Strand 5
C
320 324parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 189first strand
Strand 2
C
236 237anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 36first strand
Strand 2
D
89 93parallel
Strand 3
D
127 131parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
179 183first strand
Strand 2
D
220 225parallel
Strand 3
D
254 258parallel
Strand 4
D
282 286parallel
Strand 5
D
320 324parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
188 189first strand
Strand 2
D
236 237anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il