Analysis of interatomic Contacts of Structural Units in PDB entry:
3UVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UVF entry

There are 6 chains in PDB entry 3UVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2TYR 256
C
 G 401 A 428
D
 C 501 T 528
B
 SER 2TYR 256
E
 G 401 A 428
F
 C 501 T 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3UVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 19Right-handed alpha
Helix 2
2
A
42 54Right-handed alpha
Helix 3
3
A
75 83Right-handed alpha
Helix 4
4
A
83 90Right-handed alpha
Helix 5
5
A
96 109Right-handed alpha
Helix 6
6
A
129 135Right-handed alpha
Helix 7
7
A
138 151Right-handed alpha
Helix 8
8
A
176 187Right-handed alpha
Helix 9
9
A
207 221Right-handed alpha
Helix 10
10
A
227 241Right-handed alpha
Helix 11
11
A
243 248Right-handed alpha
Helix 12
12
B
6 18Right-handed alpha
Helix 13
13
B
42 54Right-handed alpha
Helix 14
14
B
75 82Right-handed alpha
Helix 15
15
B
95 110Right-handed alpha
Helix 16
16
B
129 135Right-handed alpha
Helix 17
17
B
138 151Right-handed alpha
Helix 18
18
B
176 187Right-handed alpha
Helix 19
19
B
207 221Right-handed alpha
Helix 20
20
B
228 241Right-handed alpha
Helix 21
21
B
243 248Right-handed alpha
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There are 4 sheets in PDB entry 3UVF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 26first strand
Strand 2
A
29 39anti-parallel
Strand 3
A
66 73anti-parallel
Strand 4
A
57 63anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 157first strand
Strand 2
A
165 174anti-parallel
Strand 3
A
200 205anti-parallel
Strand 4
A
194 195anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 26first strand
Strand 2
B
29 39anti-parallel
Strand 3
B
67 72anti-parallel
Strand 4
B
58 62anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 157first strand
Strand 2
B
165 174anti-parallel
Strand 3
B
200 206anti-parallel
Strand 4
B
194 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il