Analysis of interatomic Contacts of Structural Units in PDB entry:
3UVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UVT entry

There are 5 chains in PDB entry 3UVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 322ALA 428
B
 GLY 321ALA 428
C
 PRO 319ALA 428
D
 SER 322ALA 428
E
 VAL 324ALA 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3UVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
331 337Right-handed alpha
Helix 2
2
A
350 365Right-handed alpha
Helix 3
3
A
384 391Right-handed alpha
Helix 4
4
A
416 428Right-handed alpha
Helix 5
5
B
331 337Right-handed alpha
Helix 6
6
B
350 364Right-handed alpha
Helix 7
7
B
384 391Right-handed alpha
Helix 8
8
B
416 428Right-handed alpha
Helix 9
9
C
331 337Right-handed alpha
Helix 10
10
C
350 364Right-handed alpha
Helix 11
11
C
384 391Right-handed alpha
Helix 12
12
C
416 427Right-handed alpha
Helix 13
13
D
331 337Right-handed alpha
Helix 14
14
D
350 367Right-handed alpha
Helix 15
15
D
384 391Right-handed alpha
Helix 16
16
D
416 428Right-handed alpha
Helix 17
17
E
332 337Right-handed alpha
Helix 18
18
E
356 366Right-handed alpha
Helix 19
19
E
416 428Right-handed alpha
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There are 5 sheets in PDB entry 3UVT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
374 380parallel
Strand 3
A
340 346parallel
Strand 4
A
398 403anti-parallel
Strand 5
A
406 411anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 326first strand
Strand 2
B
374 380parallel
Strand 3
B
340 346parallel
Strand 4
B
398 403anti-parallel
Strand 5
B
406 410anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
325 327first strand
Strand 2
C
375 380parallel
Strand 3
C
340 346parallel
Strand 4
C
398 403anti-parallel
Strand 5
C
406 410anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
325 327first strand
Strand 2
D
374 380parallel
Strand 3
D
340 346parallel
Strand 4
D
398 403anti-parallel
Strand 5
D
406 410anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
325 326first strand
Strand 2
E
375 379parallel
Strand 3
E
340 345parallel
Strand 4
E
398 403anti-parallel
Strand 5
E
406 410anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il