Analysis of interatomic Contacts of Structural Units in PDB entry:
3UWS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UWS entry

There are 4 chains in PDB entry 3UWS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 24LYS 147
B
 ALA 148GLU 375
C
 ARG 28LYS 147
D
 ALA 148GLU 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3UWS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 58Right-handed alpha
Helix 2
2
A
59 64Right-handed alpha
Helix 3
3
A
106 121Right-handed alpha
Helix 4
4
A
141 146Right-handed 310
Helix 5
5
B
158 166Right-handed alpha
Helix 6
6
B
183 190Right-handed alpha
Helix 7
7
B
210 219Right-handed alpha
Helix 8
8
B
224 238Right-handed alpha
Helix 9
9
B
253 266Right-handed alpha
Helix 10
10
B
269 275Right-handed alpha
Helix 11
11
B
277 281Right-handed 310
Helix 12
12
B
297 305Right-handed alpha
Helix 13
13
B
306 320Right-handed alpha
Helix 14
14
B
356 367Right-handed alpha
Helix 15
15
B
367 375Right-handed alpha
Helix 16
16
C
43 45Right-handed 310
Helix 17
17
C
46 58Right-handed alpha
Helix 18
18
C
59 64Right-handed alpha
Helix 19
19
C
106 121Right-handed alpha
Helix 20
20
C
141 146Right-handed 310
Helix 21
21
D
158 166Right-handed alpha
Helix 22
22
D
183 190Right-handed alpha
Helix 23
23
D
210 219Right-handed alpha
Helix 24
24
D
224 238Right-handed alpha
Helix 25
25
D
253 266Right-handed alpha
Helix 26
26
D
269 275Right-handed alpha
Helix 27
27
D
277 281Right-handed 310
Helix 28
28
D
297 305Right-handed alpha
Helix 29
29
D
306 320Right-handed alpha
Helix 30
30
D
356 367Right-handed alpha
Helix 31
31
D
367 375Right-handed alpha
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There are 8 sheets in PDB entry 3UWS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 98first strand
Strand 2
A
80 87anti-parallel
Strand 3
A
67 74anti-parallel
Strand 4
A
29 39parallel
Strand 5
A
123 131parallel
Strand 6
B
171 177parallel
Strand 7
B
194 199parallel
Strand 8
B
245 250anti-parallel
Strand 9
B
321 326anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 152first strand
Strand 2
B
155 157anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
348 350anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 332first strand
Strand 2
B
337 340anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 98first strand
Strand 2
C
80 87anti-parallel
Strand 3
C
67 73anti-parallel
Strand 4
C
31 38parallel
Strand 5
C
125 131parallel
Strand 6
D
171 177parallel
Strand 7
D
194 199parallel
Strand 8
D
245 250anti-parallel
Strand 9
D
321 326anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
149 152first strand
Strand 2
D
155 157anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
294 296first strand
Strand 2
D
348 350anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
329 332first strand
Strand 2
D
337 340anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il