Analysis of interatomic Contacts of Structural Units in PDB entry:
3UX9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UX9 entry

There are 4 chains in PDB entry 3UX9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 9	THR 156
B	ILE 4	LEU 254
C	LEU 9	THR 156
D	ILE 4	GLU 255

There are 24 helices in PDB entry 3UX9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	11	21	Right-handed alpha
Helix 2	2	A	25	29	Right-handed 310
Helix 3	3	A	39	44	Right-handed 310
Helix 4	4	A	53	69	Right-handed alpha
Helix 5	5	A	70	77	Right-handed alpha
Helix 6	6	A	78	100	Right-handed alpha
Helix 7	7	A	114	134	Right-handed alpha
Helix 8	8	A	137	156	Right-handed alpha
Helix 9	9	B	82	86	Right-handed 310
Helix 10	10	B	162	166	Right-handed 310
Helix 11	11	B	196	199	Right-handed 310
Helix 12	12	B	221	225	Right-handed 310
Helix 13	13	C	11	21	Right-handed alpha
Helix 14	14	C	25	29	Right-handed 310
Helix 15	15	C	39	43	Right-handed 310
Helix 16	16	C	53	69	Right-handed alpha
Helix 17	17	C	70	77	Right-handed alpha
Helix 18	18	C	78	100	Right-handed alpha
Helix 19	19	C	114	134	Right-handed alpha
Helix 20	20	C	137	156	Right-handed alpha
Helix 21	21	D	82	86	Right-handed 310
Helix 22	22	D	162	166	Right-handed 310
Helix 23	23	D	196	199	Right-handed 310
Helix 24	24	D	221	225	Right-handed 310

There are 12 sheets in PDB entry 3UX9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	107	111	parallel
Strand 3	B	87	95	anti-parallel
Strand 4	B	37	41	anti-parallel
Strand 5	B	48	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	107	111	parallel
Strand 3	B	87	95	anti-parallel
Strand 4	B	100	103	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	25	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	65	70	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	141	first strand
Strand 2	B	152	159	anti-parallel
Strand 3	B	212	217	anti-parallel
Strand 4	B	202	207	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	146	first strand
Strand 2	B	247	251	parallel
Strand 3	B	226	233	anti-parallel
Strand 4	B	167	173	anti-parallel
Strand 5	B	179	185	anti-parallel
Strand 6	B	192	194	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	146	first strand
Strand 2	B	247	251	parallel
Strand 3	B	226	233	anti-parallel
Strand 4	B	240	243	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	107	111	parallel
Strand 3	D	87	95	anti-parallel
Strand 4	D	37	41	anti-parallel
Strand 5	D	48	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	107	111	parallel
Strand 3	D	87	95	anti-parallel
Strand 4	D	100	103	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	25	first strand
Strand 2	D	73	78	anti-parallel
Strand 3	D	65	70	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	152	159	anti-parallel
Strand 3	D	212	217	anti-parallel
Strand 4	D	202	207	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	146	first strand
Strand 2	D	247	251	parallel
Strand 3	D	226	233	anti-parallel
Strand 4	D	167	173	anti-parallel
Strand 5	D	179	185	anti-parallel
Strand 6	D	192	194	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	146	first strand
Strand 2	D	247	251	parallel
Strand 3	D	226	233	anti-parallel
Strand 4	D	240	243	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UX9

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UX9