Analysis of interatomic Contacts of Structural Units in PDB entry:
3UXF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UXF entry

There is 1 chain in PDB entry 3UXF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 35LYS 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 3UXF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 103Right-handed alpha
Helix 2
2
A
106 111Right-handed alpha
Helix 3
3
A
279 292Right-handed alpha
Helix 4
4
A
371 376Right-handed 310
Helix 5
5
A
471 476Right-handed alpha
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There are 9 sheets in PDB entry 3UXF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
47 51anti-parallel
Strand 3
A
176 179parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 122first strand
Strand 2
A
81 87anti-parallel
Strand 3
A
139 147anti-parallel
Strand 4
A
158 162anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
173 174anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 193first strand
Strand 2
A
204 211anti-parallel
Strand 3
A
298 305anti-parallel
Strand 4
A
244 248anti-parallel
Strand 5
A
253 254anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 267first strand
Strand 2
A
272 278anti-parallel
Strand 3
A
227 232anti-parallel
Strand 4
A
315 324anti-parallel
Strand 5
A
352 365anti-parallel
Strand 6
A
422 429anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
315 324anti-parallel
Strand 3
A
352 365anti-parallel
Strand 4
A
481 487parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 394first strand
Strand 2
A
379 388anti-parallel
Strand 3
A
415 416anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 394first strand
Strand 2
A
379 388anti-parallel
Strand 3
A
447 454anti-parallel
Strand 4
A
466 468anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
437 438anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il