Analysis of interatomic Contacts of Structural Units in PDB entry:
3UXJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UXJ entry

There are 4 chains in PDB entry 3UXJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 27	GLN 287
B	ASN 29	GLN 287
C	ASN 29	GLN 287
D	TYR 27	GLN 287

There are 32 helices in PDB entry 3UXJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	32	36	Right-handed 310
Helix 2	2	A	41	48	Right-handed alpha
Helix 3	3	A	94	104	Right-handed alpha
Helix 4	4	A	112	129	Right-handed alpha
Helix 5	5	A	138	143	Right-handed 310
Helix 6	6	A	168	173	Right-handed 310
Helix 7	7	A	215	225	Right-handed alpha
Helix 8	8	A	232	249	Right-handed alpha
Helix 9	9	B	32	36	Right-handed 310
Helix 10	10	B	41	48	Right-handed alpha
Helix 11	11	B	94	104	Right-handed alpha
Helix 12	12	B	112	129	Right-handed alpha
Helix 13	13	B	140	143	Right-handed 310
Helix 14	14	B	168	173	Right-handed 310
Helix 15	15	B	215	225	Right-handed alpha
Helix 16	16	B	232	249	Right-handed alpha
Helix 17	17	C	32	36	Right-handed 310
Helix 18	18	C	41	48	Right-handed alpha
Helix 19	19	C	94	104	Right-handed alpha
Helix 20	20	C	112	129	Right-handed alpha
Helix 21	21	C	140	143	Right-handed 310
Helix 22	22	C	168	173	Right-handed 310
Helix 23	23	C	215	225	Right-handed alpha
Helix 24	24	C	232	249	Right-handed alpha
Helix 25	25	D	32	36	Right-handed 310
Helix 26	26	D	41	46	Right-handed alpha
Helix 27	27	D	94	104	Right-handed alpha
Helix 28	28	D	112	129	Right-handed alpha
Helix 29	29	D	138	143	Right-handed 310
Helix 30	30	D	168	173	Right-handed 310
Helix 31	31	D	215	225	Right-handed alpha
Helix 32	32	D	232	249	Right-handed alpha

There are 13 sheets in PDB entry 3UXJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	91	93	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	80	86	anti-parallel
Strand 3	A	57	64	anti-parallel
Strand 4	A	265	272	anti-parallel
Strand 5	A	252	259	anti-parallel
Strand 6	A	200	214	anti-parallel
Strand 7	A	176	194	anti-parallel
Strand 8	A	153	154	parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	80	86	anti-parallel
Strand 3	A	57	64	anti-parallel
Strand 4	A	265	272	anti-parallel
Strand 5	A	252	259	anti-parallel
Strand 6	A	200	214	anti-parallel
Strand 7	A	176	194	anti-parallel
Strand 8	A	230	231	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	70	first strand
Strand 2	A	76	78	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	91	93	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	138	first strand
Strand 2	B	76	86	anti-parallel
Strand 3	B	57	70	anti-parallel
Strand 4	B	265	272	anti-parallel
Strand 5	B	252	259	anti-parallel
Strand 6	B	200	214	anti-parallel
Strand 7	B	176	194	anti-parallel
Strand 8	B	153	154	parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	138	first strand
Strand 2	B	76	86	anti-parallel
Strand 3	B	57	70	anti-parallel
Strand 4	B	265	272	anti-parallel
Strand 5	B	252	259	anti-parallel
Strand 6	B	200	214	anti-parallel
Strand 7	B	176	194	anti-parallel
Strand 8	B	230	231	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	91	93	anti-parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	138	first strand
Strand 2	C	76	86	anti-parallel
Strand 3	C	57	70	anti-parallel
Strand 4	C	265	272	anti-parallel
Strand 5	C	252	259	anti-parallel
Strand 6	C	200	214	anti-parallel
Strand 7	C	176	194	anti-parallel
Strand 8	C	153	154	parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	138	first strand
Strand 2	C	76	86	anti-parallel
Strand 3	C	57	70	anti-parallel
Strand 4	C	265	272	anti-parallel
Strand 5	C	252	259	anti-parallel
Strand 6	C	200	214	anti-parallel
Strand 7	C	176	194	anti-parallel
Strand 8	C	230	231	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	91	93	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	137	first strand
Strand 2	D	76	86	anti-parallel
Strand 3	D	57	70	anti-parallel
Strand 4	D	265	272	anti-parallel
Strand 5	D	252	259	anti-parallel
Strand 6	D	200	214	anti-parallel
Strand 7	D	176	194	anti-parallel
Strand 8	D	153	154	parallel

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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	137	first strand
Strand 2	D	76	86	anti-parallel
Strand 3	D	57	70	anti-parallel
Strand 4	D	265	272	anti-parallel
Strand 5	D	252	259	anti-parallel
Strand 6	D	200	214	anti-parallel
Strand 7	D	176	194	anti-parallel
Strand 8	D	230	231	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UXJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UXJ