Analysis of interatomic Contacts of Structural Units in PDB entry:
3UXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UXP entry

There are 6 chains in PDB entry 3UXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 9SER 334
B
 GLU 9SER 334
P
 A 1 G 7
T
 A 3 A 11
D
 A 1 G 7
E
 A 3 A 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3UXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 29Right-handed alpha
Helix 2
2
A
33 49Right-handed alpha
Helix 3
3
A
55 61Right-handed alpha
Helix 4
4
A
66 79Right-handed alpha
Helix 5
5
A
83 90Right-handed alpha
Helix 6
6
A
91 101Right-handed alpha
Helix 7
7
A
107 117Right-handed alpha
Helix 8
8
A
121 127Right-handed alpha
Helix 9
9
A
128 132Right-handed 310
Helix 10
10
A
133 142Right-handed alpha
Helix 11
11
A
142 148Right-handed alpha
Helix 12
12
A
152 170Right-handed alpha
Helix 13
13
A
178 183Right-handed alpha
Helix 14
14
A
207 221Right-handed alpha
Helix 15
15
A
261 263Right-handed 310
Helix 16
16
A
264 273Right-handed alpha
Helix 17
17
A
275 285Right-handed alpha
Helix 18
18
A
315 323Right-handed alpha
Helix 19
19
B
12 29Right-handed alpha
Helix 20
20
B
32 49Right-handed alpha
Helix 21
21
B
55 61Right-handed alpha
Helix 22
22
B
66 80Right-handed alpha
Helix 23
23
B
82 89Right-handed alpha
Helix 24
24
B
91 101Right-handed alpha
Helix 25
25
B
108 116Right-handed alpha
Helix 26
26
B
121 128Right-handed alpha
Helix 27
27
B
129 132Right-handed 310
Helix 28
28
B
133 142Right-handed alpha
Helix 29
29
B
142 148Right-handed alpha
Helix 30
30
B
152 170Right-handed alpha
Helix 31
31
B
208 221Right-handed alpha
Helix 32
32
B
264 274Right-handed alpha
Helix 33
33
B
275 286Right-handed alpha
Helix 34
34
B
315 323Right-handed alpha
Helix 35
35
B
329 333Right-handed 310
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There are 5 sheets in PDB entry 3UXP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
187 188anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 177first strand
Strand 2
A
191 196anti-parallel
Strand 3
A
253 260parallel
Strand 4
A
234 239anti-parallel
Strand 5
A
224 230anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
B
187 188anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 177first strand
Strand 2
B
192 196anti-parallel
Strand 3
B
253 259parallel
Strand 4
B
234 239anti-parallel
Strand 5
B
224 230anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 293first strand
Strand 2
B
298 300anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il