Analysis of interatomic Contacts of Structural Units in PDB entry:
3UXY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UXY entry

There are 4 chains in PDB entry 3UXY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 4ALA 244
B
 GLN 2ALA 244
C
 PHE 4ALA 244
D
 PHE 4ALA 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3UXY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 29Right-handed alpha
Helix 2
2
A
55 71Right-handed alpha
Helix 3
3
A
87 91Right-handed 310
Helix 4
4
A
92 104Right-handed alpha
Helix 5
5
A
104 122Right-handed alpha
Helix 6
6
A
141 163Right-handed alpha
Helix 7
7
A
179 189Right-handed alpha
Helix 8
8
A
192 202Right-handed alpha
Helix 9
9
A
211 224Right-handed alpha
Helix 10
10
A
225 228Right-handed 310
Helix 11
11
B
16 29Right-handed alpha
Helix 12
12
B
55 71Right-handed alpha
Helix 13
13
B
87 91Right-handed 310
Helix 14
14
B
92 104Right-handed alpha
Helix 15
15
B
104 121Right-handed alpha
Helix 16
16
B
131 136Right-handed alpha
Helix 17
17
B
141 163Right-handed alpha
Helix 18
18
B
179 189Right-handed alpha
Helix 19
19
B
192 202Right-handed alpha
Helix 20
20
B
211 224Right-handed alpha
Helix 21
21
B
225 228Right-handed 310
Helix 22
22
C
16 29Right-handed alpha
Helix 23
23
C
55 71Right-handed alpha
Helix 24
24
C
87 91Right-handed 310
Helix 25
25
C
92 104Right-handed alpha
Helix 26
26
C
104 121Right-handed alpha
Helix 27
27
C
131 136Right-handed alpha
Helix 28
28
C
141 163Right-handed alpha
Helix 29
29
C
179 188Right-handed alpha
Helix 30
30
C
192 202Right-handed alpha
Helix 31
31
C
211 224Right-handed alpha
Helix 32
32
C
225 228Right-handed 310
Helix 33
33
D
16 29Right-handed alpha
Helix 34
34
D
55 71Right-handed alpha
Helix 35
35
D
87 91Right-handed 310
Helix 36
36
D
92 104Right-handed alpha
Helix 37
37
D
104 122Right-handed alpha
Helix 38
38
D
141 163Right-handed alpha
Helix 39
39
D
179 184Right-handed alpha
Helix 40
40
D
192 202Right-handed alpha
Helix 41
41
D
211 224Right-handed alpha
Helix 42
42
D
225 228Right-handed 310
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There are 4 sheets in PDB entry 3UXY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
32 35parallel
Strand 3
A
8 11parallel
Strand 4
A
75 78parallel
Strand 5
A
124 129parallel
Strand 6
A
167 174parallel
Strand 7
A
234 237parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
32 35parallel
Strand 3
B
8 11parallel
Strand 4
B
75 78parallel
Strand 5
B
124 129parallel
Strand 6
B
167 174parallel
Strand 7
B
234 237parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 48first strand
Strand 2
C
32 35parallel
Strand 3
C
8 11parallel
Strand 4
C
75 78parallel
Strand 5
C
124 129parallel
Strand 6
C
167 174parallel
Strand 7
C
234 237parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 50first strand
Strand 2
D
32 37parallel
Strand 3
D
8 11parallel
Strand 4
D
75 78parallel
Strand 5
D
124 129parallel
Strand 6
D
167 174parallel
Strand 7
D
234 237parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il