Analysis of interatomic Contacts of Structural Units in PDB entry:
3UY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UY5 entry

There is 1 chain in PDB entry 3UY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8PHE 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3UY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 17Right-handed 310
Helix 2
2
A
18 30Right-handed alpha
Helix 3
3
A
35 43Right-handed alpha
Helix 4
4
A
44 46Right-handed 310
Helix 5
5
A
95 98Right-handed 310
Helix 6
6
A
101 117Right-handed alpha
Helix 7
7
A
132 136Right-handed 310
Helix 8
8
A
173 176Right-handed 310
Helix 9
9
A
177 192Right-handed alpha
Helix 10
10
A
199 209Right-handed alpha
Helix 11
11
A
251 264Right-handed alpha
Helix 12
12
A
280 285Right-handed 310
Helix 13
13
A
287 289Right-handed 310
Helix 14
14
A
306 314Right-handed alpha
Helix 15
15
A
358 367Right-handed alpha
Helix 16
16
A
371 378Right-handed alpha
Helix 17
17
A
385 396Right-handed alpha
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There are 3 sheets in PDB entry 3UY5. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
51 56anti-parallel
Strand 3
A
64 77anti-parallel
Strand 4
A
81 93anti-parallel
Strand 5
A
121 125parallel
Strand 6
A
300 304anti-parallel
Strand 7
A
138 139anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
221 225anti-parallel
Strand 3
A
228 234anti-parallel
Strand 4
A
241 249anti-parallel
Strand 5
A
270 275parallel
Strand 6
A
142 149anti-parallel
Strand 7
A
291 298anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 348first strand
Strand 2
A
333 340anti-parallel
Strand 3
A
323 329anti-parallel
Strand 4
A
355 357parallel
Strand 5
A
382 383anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il