Analysis of interatomic Contacts of Structural Units in PDB entry:
3UY9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UY9 entry

There are 16 chains in PDB entry 3UY9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 16	ASN 245
B	ILE 16	ASN 245
C	ILE 16	ASN 245
D	ILE 16	ASN 245
E	ILE 16	ASN 245
F	ILE 16	ASN 245
G	ILE 16	ASN 245
H	ILE 16	ASN 245
I	ILE 16	ASN 245
J	ILE 16	ASN 245
K	ILE 16	ASN 245
L	ILE 16	ASN 245
M	ILE 16	ASN 245
N	ILE 16	ASN 245
O	ILE 16	ASN 245
P	ILE 16	ASN 245

There are 48 helices in PDB entry 3UY9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	55	59	Right-handed 310
Helix 2	2	A	166	171	Right-handed alpha
Helix 3	3	A	234	244	Right-handed alpha
Helix 4	4	B	55	59	Right-handed 310
Helix 5	5	B	166	171	Right-handed alpha
Helix 6	6	B	234	244	Right-handed alpha
Helix 7	7	C	55	59	Right-handed 310
Helix 8	8	C	166	171	Right-handed alpha
Helix 9	9	C	234	244	Right-handed alpha
Helix 10	10	D	55	59	Right-handed 310
Helix 11	11	D	166	171	Right-handed alpha
Helix 12	12	D	234	244	Right-handed alpha
Helix 13	13	E	55	59	Right-handed 310
Helix 14	14	E	166	171	Right-handed alpha
Helix 15	15	E	234	244	Right-handed alpha
Helix 16	16	F	55	59	Right-handed 310
Helix 17	17	F	166	171	Right-handed alpha
Helix 18	18	F	234	244	Right-handed alpha
Helix 19	19	G	55	59	Right-handed 310
Helix 20	20	G	166	171	Right-handed alpha
Helix 21	21	G	234	244	Right-handed alpha
Helix 22	22	H	55	59	Right-handed 310
Helix 23	23	H	166	171	Right-handed alpha
Helix 24	24	H	234	244	Right-handed alpha
Helix 25	25	I	55	59	Right-handed 310
Helix 26	26	I	166	171	Right-handed alpha
Helix 27	27	I	234	244	Right-handed alpha
Helix 28	28	J	55	59	Right-handed 310
Helix 29	29	J	166	171	Right-handed alpha
Helix 30	30	J	234	244	Right-handed alpha
Helix 31	31	K	55	59	Right-handed 310
Helix 32	32	K	166	171	Right-handed alpha
Helix 33	33	K	234	244	Right-handed alpha
Helix 34	34	L	55	59	Right-handed 310
Helix 35	35	L	166	171	Right-handed alpha
Helix 36	36	L	234	244	Right-handed alpha
Helix 37	37	M	55	59	Right-handed 310
Helix 38	38	M	166	171	Right-handed alpha
Helix 39	39	M	234	244	Right-handed alpha
Helix 40	40	N	55	59	Right-handed 310
Helix 41	41	N	166	171	Right-handed alpha
Helix 42	42	N	234	244	Right-handed alpha
Helix 43	43	O	55	59	Right-handed 310
Helix 44	44	O	166	171	Right-handed alpha
Helix 45	45	O	234	244	Right-handed alpha
Helix 46	46	P	55	59	Right-handed 310
Helix 47	47	P	166	171	Right-handed alpha
Helix 48	48	P	234	244	Right-handed alpha

There are 32 sheets in PDB entry 3UY9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	156	161	anti-parallel
Strand 3	A	135	140	anti-parallel
Strand 4	A	198	201	anti-parallel
Strand 5	A	204	221	anti-parallel
Strand 6	A	224	230	anti-parallel
Strand 7	A	180	183	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	34	first strand
Strand 2	A	40	48	anti-parallel
Strand 3	A	51	54	anti-parallel
Strand 4	A	104	108	anti-parallel
Strand 5	A	81	90	anti-parallel
Strand 6	A	64	67	anti-parallel
Strand 7	A	30	34	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	135	140	anti-parallel
Strand 4	B	198	201	anti-parallel
Strand 5	B	204	221	anti-parallel
Strand 6	B	224	230	anti-parallel
Strand 7	B	180	183	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	34	first strand
Strand 2	B	40	46	anti-parallel
Strand 3	B	51	54	anti-parallel
Strand 4	B	104	108	anti-parallel
Strand 5	B	81	90	anti-parallel
Strand 6	B	64	67	anti-parallel
Strand 7	B	30	34	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	156	163	anti-parallel
Strand 3	C	180	183	anti-parallel
Strand 4	C	226	230	anti-parallel
Strand 5	C	204	215	anti-parallel
Strand 6	C	198	201	anti-parallel
Strand 7	C	135	140	anti-parallel
Strand 8	C	156	163	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	34	first strand
Strand 2	C	40	48	anti-parallel
Strand 3	C	51	54	anti-parallel
Strand 4	C	104	108	anti-parallel
Strand 5	C	81	90	anti-parallel
Strand 6	C	64	67	anti-parallel
Strand 7	C	30	34	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	156	161	anti-parallel
Strand 3	D	135	140	anti-parallel
Strand 4	D	198	201	anti-parallel
Strand 5	D	204	221	anti-parallel
Strand 6	D	224	230	anti-parallel
Strand 7	D	180	183	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	34	first strand
Strand 2	D	40	48	anti-parallel
Strand 3	D	51	54	anti-parallel
Strand 4	D	104	108	anti-parallel
Strand 5	D	81	90	anti-parallel
Strand 6	D	64	67	anti-parallel
Strand 7	D	30	34	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	21	first strand
Strand 2	E	156	161	anti-parallel
Strand 3	E	135	140	anti-parallel
Strand 4	E	198	201	anti-parallel
Strand 5	E	204	215	anti-parallel
Strand 6	E	226	230	anti-parallel
Strand 7	E	180	183	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	34	first strand
Strand 2	E	40	48	anti-parallel
Strand 3	E	51	54	anti-parallel
Strand 4	E	104	108	anti-parallel
Strand 5	E	81	90	anti-parallel
Strand 6	E	64	67	anti-parallel
Strand 7	E	30	34	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	21	first strand
Strand 2	F	156	161	anti-parallel
Strand 3	F	135	140	anti-parallel
Strand 4	F	198	201	anti-parallel
Strand 5	F	204	221	anti-parallel
Strand 6	F	224	230	anti-parallel
Strand 7	F	180	183	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	34	first strand
Strand 2	F	40	48	anti-parallel
Strand 3	F	51	54	anti-parallel
Strand 4	F	104	108	anti-parallel
Strand 5	F	81	90	anti-parallel
Strand 6	F	64	67	anti-parallel
Strand 7	F	30	34	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	21	first strand
Strand 2	G	156	161	anti-parallel
Strand 3	G	135	140	anti-parallel
Strand 4	G	198	201	anti-parallel
Strand 5	G	204	215	anti-parallel
Strand 6	G	226	230	anti-parallel
Strand 7	G	180	183	anti-parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	34	first strand
Strand 2	G	40	48	anti-parallel
Strand 3	G	51	54	anti-parallel
Strand 4	G	104	108	anti-parallel
Strand 5	G	81	90	anti-parallel
Strand 6	G	64	67	anti-parallel
Strand 7	G	30	34	anti-parallel

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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	21	first strand
Strand 2	H	156	161	anti-parallel
Strand 3	H	135	140	anti-parallel
Strand 4	H	198	201	anti-parallel
Strand 5	H	204	216	anti-parallel
Strand 6	H	226	230	anti-parallel
Strand 7	H	180	183	anti-parallel

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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	34	first strand
Strand 2	H	40	48	anti-parallel
Strand 3	H	51	54	anti-parallel
Strand 4	H	104	108	anti-parallel
Strand 5	H	81	90	anti-parallel
Strand 6	H	64	67	anti-parallel
Strand 7	H	30	34	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	20	21	first strand
Strand 2	I	156	161	anti-parallel
Strand 3	I	135	140	anti-parallel
Strand 4	I	198	201	anti-parallel
Strand 5	I	204	216	anti-parallel
Strand 6	I	226	230	anti-parallel
Strand 7	I	180	183	anti-parallel

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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	30	34	first strand
Strand 2	I	40	48	anti-parallel
Strand 3	I	51	54	anti-parallel
Strand 4	I	104	108	anti-parallel
Strand 5	I	81	90	anti-parallel
Strand 6	I	64	67	anti-parallel
Strand 7	I	30	34	anti-parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	20	21	first strand
Strand 2	J	156	161	anti-parallel
Strand 3	J	135	140	anti-parallel
Strand 4	J	198	201	anti-parallel
Strand 5	J	204	216	anti-parallel
Strand 6	J	226	230	anti-parallel
Strand 7	J	180	183	anti-parallel

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There are 7 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	30	34	first strand
Strand 2	J	40	48	anti-parallel
Strand 3	J	51	54	anti-parallel
Strand 4	J	104	108	anti-parallel
Strand 5	J	81	90	anti-parallel
Strand 6	J	64	67	anti-parallel
Strand 7	J	30	34	anti-parallel

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There are 7 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	20	21	first strand
Strand 2	K	156	161	anti-parallel
Strand 3	K	135	140	anti-parallel
Strand 4	K	198	201	anti-parallel
Strand 5	K	204	216	anti-parallel
Strand 6	K	226	230	anti-parallel
Strand 7	K	180	183	anti-parallel

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There are 7 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	30	34	first strand
Strand 2	K	40	48	anti-parallel
Strand 3	K	51	54	anti-parallel
Strand 4	K	104	108	anti-parallel
Strand 5	K	81	90	anti-parallel
Strand 6	K	64	67	anti-parallel
Strand 7	K	30	34	anti-parallel

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There are 7 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	21	first strand
Strand 2	L	156	161	anti-parallel
Strand 3	L	135	140	anti-parallel
Strand 4	L	198	201	anti-parallel
Strand 5	L	204	215	anti-parallel
Strand 6	L	226	230	anti-parallel
Strand 7	L	180	183	anti-parallel

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There are 7 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	34	first strand
Strand 2	L	40	46	anti-parallel
Strand 3	L	51	54	anti-parallel
Strand 4	L	104	108	anti-parallel
Strand 5	L	81	90	anti-parallel
Strand 6	L	64	67	anti-parallel
Strand 7	L	30	34	anti-parallel

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There are 7 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	20	21	first strand
Strand 2	M	156	161	anti-parallel
Strand 3	M	135	140	anti-parallel
Strand 4	M	198	201	anti-parallel
Strand 5	M	204	221	anti-parallel
Strand 6	M	224	230	anti-parallel
Strand 7	M	180	183	anti-parallel

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There are 7 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	30	34	first strand
Strand 2	M	40	48	anti-parallel
Strand 3	M	51	54	anti-parallel
Strand 4	M	104	108	anti-parallel
Strand 5	M	81	90	anti-parallel
Strand 6	M	64	67	anti-parallel
Strand 7	M	30	34	anti-parallel

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There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	20	21	first strand
Strand 2	N	156	161	anti-parallel
Strand 3	N	135	140	anti-parallel
Strand 4	N	198	201	anti-parallel
Strand 5	N	204	221	anti-parallel
Strand 6	N	224	230	anti-parallel
Strand 7	N	180	183	anti-parallel

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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	30	34	first strand
Strand 2	N	40	48	anti-parallel
Strand 3	N	51	54	anti-parallel
Strand 4	N	104	108	anti-parallel
Strand 5	N	81	90	anti-parallel
Strand 6	N	64	67	anti-parallel
Strand 7	N	30	34	anti-parallel

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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	20	21	first strand
Strand 2	O	156	163	anti-parallel
Strand 3	O	180	183	anti-parallel
Strand 4	O	226	230	anti-parallel
Strand 5	O	209	215	anti-parallel
Strand 6	O	198	201	anti-parallel
Strand 7	O	135	140	anti-parallel
Strand 8	O	156	163	anti-parallel

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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	30	34	first strand
Strand 2	O	40	48	anti-parallel
Strand 3	O	51	54	anti-parallel
Strand 4	O	104	108	anti-parallel
Strand 5	O	81	90	anti-parallel
Strand 6	O	64	67	anti-parallel
Strand 7	O	30	34	anti-parallel

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There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	20	21	first strand
Strand 2	P	156	161	anti-parallel
Strand 3	P	135	140	anti-parallel
Strand 4	P	198	201	anti-parallel
Strand 5	P	204	216	anti-parallel
Strand 6	P	226	230	anti-parallel
Strand 7	P	180	183	anti-parallel

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There are 7 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	30	34	first strand
Strand 2	P	40	48	anti-parallel
Strand 3	P	51	54	anti-parallel
Strand 4	P	104	108	anti-parallel
Strand 5	P	81	90	anti-parallel
Strand 6	P	64	67	anti-parallel
Strand 7	P	30	34	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UY9

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UY9