Analysis of interatomic Contacts of Structural Units in PDB entry:
3UYU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UYU entry

There are 2 chains in PDB entry 3UYU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 21GLN 252
B
 GLN 21GLN 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3UYU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 34Right-handed 310
Helix 2
2
A
60 62Right-handed 310
Helix 3
3
A
95 117Right-handed alpha
Helix 4
4
A
125 129Right-handed 310
Helix 5
5
A
185 187Right-handed 310
Helix 6
6
B
28 32Right-handed 310
Helix 7
7
B
60 62Right-handed 310
Helix 8
8
B
95 117Right-handed alpha
Helix 9
9
B
125 129Right-handed 310
Helix 10
10
B
185 187Right-handed 310
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There are 9 sheets in PDB entry 3UYU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
49 51parallel
Strand 3
A
239 241parallel
Strand 4
A
222 229parallel
Strand 5
A
36 38parallel
Strand 6
A
54 56parallel
Strand 7
A
87 89parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
49 51parallel
Strand 3
A
239 241parallel
Strand 4
A
222 229parallel
Strand 5
A
204 211parallel
Strand 6
A
189 193parallel
Strand 7
A
162 166parallel
Strand 8
A
138 142parallel
Strand 9
A
122 123parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
41 45parallel
Strand 3
A
232 236parallel
Strand 4
A
215 217parallel
Strand 5
A
197 199parallel
Strand 6
A
170 172parallel
Strand 7
A
146 148parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
78 79anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
152 155parallel
Strand 3
A
178 181parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 84first strand
Strand 2
B
49 51parallel
Strand 3
B
239 241parallel
Strand 4
B
222 229parallel
Strand 5
B
34 38parallel
Strand 6
B
53 56parallel
Strand 7
B
87 89parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 84first strand
Strand 2
B
49 51parallel
Strand 3
B
239 241parallel
Strand 4
B
222 229parallel
Strand 5
B
204 211parallel
Strand 6
B
189 193parallel
Strand 7
B
162 166parallel
Strand 8
B
138 142parallel
Strand 9
B
122 123parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
41 45parallel
Strand 3
B
232 236parallel
Strand 4
B
215 217parallel
Strand 5
B
197 199parallel
Strand 6
B
170 172parallel
Strand 7
B
146 148parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
152 155parallel
Strand 3
B
178 181parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il