Analysis of interatomic Contacts of Structural Units in PDB entry:
3UZB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UZB entry

There are 4 chains in PDB entry 3UZB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 24	VAL 358
B	ILE 24	VAL 358
C	ILE 24	VAL 358
D	ILE 24	VAL 358

There are 35 helices in PDB entry 3UZB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	93	108	Right-handed alpha
Helix 2	2	A	114	128	Right-handed alpha
Helix 3	3	A	129	133	Right-handed 310
Helix 4	4	A	197	201	Right-handed 310
Helix 5	5	A	203	209	Right-handed alpha
Helix 6	6	A	210	220	Right-handed alpha
Helix 7	7	A	265	278	Right-handed alpha
Helix 8	8	A	289	294	Right-handed 310
Helix 9	9	A	330	346	Right-handed alpha
Helix 10	10	B	66	71	Right-handed alpha
Helix 11	11	B	93	108	Right-handed alpha
Helix 12	12	B	114	129	Right-handed alpha
Helix 13	13	B	130	133	Right-handed 310
Helix 14	14	B	203	210	Right-handed alpha
Helix 15	15	B	211	220	Right-handed alpha
Helix 16	16	B	265	275	Right-handed alpha
Helix 17	17	B	330	345	Right-handed alpha
Helix 18	18	C	66	71	Right-handed alpha
Helix 19	19	C	93	108	Right-handed alpha
Helix 20	20	C	114	129	Right-handed alpha
Helix 21	21	C	130	133	Right-handed 310
Helix 22	22	C	204	211	Right-handed alpha
Helix 23	23	C	211	220	Right-handed alpha
Helix 24	24	C	265	278	Right-handed alpha
Helix 25	25	C	289	294	Right-handed 310
Helix 26	26	C	330	345	Right-handed alpha
Helix 27	27	D	25	29	Right-handed 310
Helix 28	28	D	66	71	Right-handed alpha
Helix 29	29	D	93	108	Right-handed alpha
Helix 30	30	D	114	129	Right-handed alpha
Helix 31	31	D	130	133	Right-handed 310
Helix 32	32	D	204	209	Right-handed alpha
Helix 33	33	D	211	220	Right-handed alpha
Helix 34	34	D	265	278	Right-handed alpha
Helix 35	35	D	330	344	Right-handed alpha

There are 19 sheets in PDB entry 3UZB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	39	45	anti-parallel
Strand 3	A	162	172	anti-parallel
Strand 4	A	141	150	anti-parallel
Strand 5	A	74	76	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	39	45	anti-parallel
Strand 3	A	162	172	anti-parallel
Strand 4	A	141	150	anti-parallel
Strand 5	A	79	83	anti-parallel
Strand 6	A	89	91	anti-parallel
Strand 7	A	356	358	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	63	first strand
Strand 2	B	59	63	anti-parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	285	first strand
Strand 2	A	253	256	parallel
Strand 3	A	243	248	anti-parallel
Strand 4	A	236	238	anti-parallel
Strand 5	A	224	228	anti-parallel
Strand 6	A	183	187	parallel
Strand 7	A	309	315	parallel
Strand 8	A	320	322	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	285	first strand
Strand 2	A	253	256	parallel
Strand 3	A	243	248	anti-parallel
Strand 4	A	296	302	anti-parallel
Strand 5	A	309	315	anti-parallel
Strand 6	A	320	322	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	39	42	anti-parallel
Strand 3	B	162	172	anti-parallel
Strand 4	B	141	151	anti-parallel
Strand 5	B	74	76	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	39	42	anti-parallel
Strand 3	B	162	172	anti-parallel
Strand 4	B	141	151	anti-parallel
Strand 5	B	79	83	anti-parallel
Strand 6	B	89	92	anti-parallel
Strand 7	B	355	357	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	48	49	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	185	187	parallel
Strand 3	B	313	315	parallel
Strand 4	B	320	322	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	286	first strand
Strand 2	B	253	257	parallel
Strand 3	B	245	248	anti-parallel
Strand 4	B	296	301	anti-parallel
Strand 5	B	309	310	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	39	44	anti-parallel
Strand 3	C	162	172	anti-parallel
Strand 4	C	141	151	anti-parallel
Strand 5	C	74	76	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	39	44	anti-parallel
Strand 3	C	162	172	anti-parallel
Strand 4	C	141	151	anti-parallel
Strand 5	C	79	83	anti-parallel
Strand 6	C	89	90	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	63	first strand
Strand 2	D	59	63	anti-parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	C	183	186	parallel
Strand 3	C	309	316	parallel
Strand 4	C	296	302	anti-parallel
Strand 5	C	243	248	anti-parallel
Strand 6	C	253	255	anti-parallel
Strand 7	C	282	284	parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	C	183	186	parallel
Strand 3	C	309	316	parallel
Strand 4	C	319	321	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	39	45	anti-parallel
Strand 3	D	162	172	anti-parallel
Strand 4	D	141	151	anti-parallel
Strand 5	D	74	76	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	39	45	anti-parallel
Strand 3	D	162	172	anti-parallel
Strand 4	D	141	151	anti-parallel
Strand 5	D	79	83	anti-parallel
Strand 6	D	89	91	anti-parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	285	first strand
Strand 2	D	253	256	parallel
Strand 3	D	242	248	anti-parallel
Strand 4	D	238	239	anti-parallel
Strand 5	D	224	227	anti-parallel
Strand 6	D	183	186	parallel
Strand 7	D	309	316	parallel
Strand 8	D	319	322	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	285	first strand
Strand 2	D	253	256	parallel
Strand 3	D	242	248	anti-parallel
Strand 4	D	296	302	anti-parallel
Strand 5	D	309	316	anti-parallel
Strand 6	D	319	322	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UZB

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UZB