Analysis of interatomic Contacts of Structural Units in PDB entry:
3UZO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UZO entry

There are 2 chains in PDB entry 3UZO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 24VAL 358
B
 ILE 24VAL 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3UZO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 29Right-handed 310
Helix 2
2
A
66 71Right-handed alpha
Helix 3
3
A
93 108Right-handed alpha
Helix 4
4
A
114 129Right-handed alpha
Helix 5
5
A
130 133Right-handed 310
Helix 6
6
A
203 220Right-handed alpha
Helix 7
7
A
265 278Right-handed alpha
Helix 8
8
A
292 294Right-handed 310
Helix 9
9
A
330 345Right-handed alpha
Helix 10
10
B
25 29Right-handed 310
Helix 11
11
B
66 71Right-handed alpha
Helix 12
12
B
93 108Right-handed alpha
Helix 13
13
B
114 129Right-handed alpha
Helix 14
14
B
130 133Right-handed 310
Helix 15
15
B
203 220Right-handed alpha
Helix 16
16
B
265 278Right-handed alpha
Helix 17
17
B
292 294Right-handed 310
Helix 18
18
B
330 345Right-handed alpha
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There are 9 sheets in PDB entry 3UZO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
39 45anti-parallel
Strand 3
A
162 172anti-parallel
Strand 4
A
141 151anti-parallel
Strand 5
A
74 76anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
39 45anti-parallel
Strand 3
A
162 172anti-parallel
Strand 4
A
141 151anti-parallel
Strand 5
A
79 83anti-parallel
Strand 6
A
89 91anti-parallel
Strand 7
A
356 357anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
B
59 63anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
183 186parallel
Strand 3
A
309 316parallel
Strand 4
A
296 302anti-parallel
Strand 5
A
243 248anti-parallel
Strand 6
A
253 257anti-parallel
Strand 7
A
282 286parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
183 186parallel
Strand 3
A
309 316parallel
Strand 4
A
319 322anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
39 45anti-parallel
Strand 3
B
162 172anti-parallel
Strand 4
B
141 151anti-parallel
Strand 5
B
74 76anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
39 45anti-parallel
Strand 3
B
162 172anti-parallel
Strand 4
B
141 151anti-parallel
Strand 5
B
79 83anti-parallel
Strand 6
B
89 91anti-parallel
Strand 7
B
356 358anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 226first strand
Strand 2
B
183 187parallel
Strand 3
B
309 316parallel
Strand 4
B
296 302anti-parallel
Strand 5
B
243 248anti-parallel
Strand 6
B
253 257anti-parallel
Strand 7
B
282 286parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 226first strand
Strand 2
B
183 187parallel
Strand 3
B
309 316parallel
Strand 4
B
319 322anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il