Analysis of interatomic Contacts of Structural Units in PDB entry:
3V08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V08 entry

There is 1 chain in PDB entry 3V08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3ALA 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3V08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 15Right-handed alpha
Helix 2
2
A
15 31Right-handed alpha
Helix 3
3
A
35 56Right-handed alpha
Helix 4
4
A
65 77Right-handed alpha
Helix 5
5
A
79 85Right-handed alpha
Helix 6
6
A
86 93Right-handed 310
Helix 7
7
A
96 105Right-handed alpha
Helix 8
8
A
118 129Right-handed alpha
Helix 9
9
A
129 145Right-handed alpha
Helix 10
10
A
149 168Right-handed alpha
Helix 11
11
A
172 206Right-handed alpha
Helix 12
12
A
206 222Right-handed alpha
Helix 13
13
A
226 246Right-handed alpha
Helix 14
14
A
248 266Right-handed alpha
Helix 15
15
A
267 270Right-handed 310
Helix 16
16
A
271 273Right-handed 310
Helix 17
17
A
274 279Right-handed alpha
Helix 18
18
A
281 291Right-handed alpha
Helix 19
19
A
303 309Right-handed alpha
Helix 20
20
A
313 321Right-handed alpha
Helix 21
21
A
321 336Right-handed alpha
Helix 22
22
A
341 360Right-handed alpha
Helix 23
23
A
364 370Right-handed alpha
Helix 24
24
A
371 374Right-handed 310
Helix 25
25
A
375 414Right-handed alpha
Helix 26
26
A
418 438Right-handed alpha
Helix 27
27
A
440 466Right-handed alpha
Helix 28
28
A
469 479Right-handed alpha
Helix 29
29
A
482 490Right-handed alpha
Helix 30
30
A
502 507Right-handed 310
Helix 31
31
A
509 515Right-handed 310
Helix 32
32
A
516 535Right-handed alpha
Helix 33
33
A
539 560Right-handed alpha
Helix 34
34
A
562 582Right-handed alpha
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There are no sheets in PDB entry 3V08
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il