Analysis of interatomic Contacts of Structural Units in PDB entry:
3V0B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3V0B entry

There is 1 chain in PDB entry 3V0B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 1245

There are 74 helices in PDB entry 3V0B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	80	100	Right-handed alpha
Helix 2	2	A	101	113	Right-handed alpha
Helix 3	3	A	130	132	Right-handed 310
Helix 4	4	A	199	204	Right-handed 310
Helix 5	5	A	216	234	Right-handed alpha
Helix 6	6	A	259	267	Right-handed alpha
Helix 7	7	A	267	272	Right-handed alpha
Helix 8	8	A	275	299	Right-handed alpha
Helix 9	9	A	309	322	Right-handed alpha
Helix 10	10	A	334	348	Right-handed alpha
Helix 11	11	A	350	359	Right-handed alpha
Helix 12	12	A	395	399	Right-handed 310
Helix 13	13	A	401	405	Right-handed 310
Helix 14	14	A	409	413	Right-handed 310
Helix 15	15	A	460	462	Right-handed 310
Helix 16	16	A	467	471	Right-handed 310
Helix 17	17	A	495	506	Right-handed alpha
Helix 18	18	A	549	556	Right-handed alpha
Helix 19	19	A	571	578	Right-handed alpha
Helix 20	20	A	587	596	Right-handed alpha
Helix 21	21	A	599	601	Right-handed 310
Helix 22	22	A	602	620	Right-handed alpha
Helix 23	23	A	636	642	Right-handed alpha
Helix 24	24	A	648	660	Right-handed alpha
Helix 25	25	A	661	665	Right-handed 310
Helix 26	26	A	687	721	Right-handed alpha
Helix 27	27	A	721	753	Right-handed alpha
Helix 28	28	A	755	761	Right-handed alpha
Helix 29	29	A	765	800	Right-handed alpha
Helix 30	30	A	800	826	Right-handed alpha
Helix 31	31	A	833	845	Right-handed alpha
Helix 32	32	A	852	856	Right-handed 310
Helix 33	33	A	857	861	Right-handed 310
Helix 34	34	A	862	875	Right-handed alpha
Helix 35	35	A	929	933	Right-handed 310
Helix 36	36	A	954	958	Right-handed 310
Helix 37	37	A	1080	1092	Right-handed alpha
Helix 38	38	A	1210	1214	Right-handed 310
Helix 39	39	A	1266	1270	Right-handed 310
Helix 40	40	B	54	58	Right-handed 310
Helix 41	41	B	71	91	Right-handed alpha
Helix 42	42	B	92	105	Right-handed alpha
Helix 43	43	B	187	193	Right-handed alpha
Helix 44	44	B	217	235	Right-handed alpha
Helix 45	45	B	262	269	Right-handed alpha
Helix 46	46	B	272	277	Right-handed alpha
Helix 47	47	B	285	305	Right-handed alpha
Helix 48	48	B	313	324	Right-handed alpha
Helix 49	49	B	327	334	Right-handed alpha
Helix 50	50	B	335	343	Right-handed alpha
Helix 51	51	B	354	359	Right-handed alpha
Helix 52	52	B	379	384	Right-handed alpha
Helix 53	53	B	389	395	Right-handed 310
Helix 54	54	B	429	434	Right-handed alpha
Helix 55	55	B	458	464	Right-handed alpha
Helix 56	56	B	499	506	Right-handed alpha
Helix 57	57	B	519	525	Right-handed alpha
Helix 58	58	B	536	546	Right-handed alpha
Helix 59	59	B	554	574	Right-handed alpha
Helix 60	60	B	591	597	Right-handed alpha
Helix 61	61	B	604	613	Right-handed alpha
Helix 62	62	B	614	618	Right-handed 310
Helix 63	63	B	642	676	Right-handed alpha
Helix 64	64	B	676	712	Right-handed alpha
Helix 65	65	B	716	760	Right-handed alpha
Helix 66	66	B	760	786	Right-handed alpha
Helix 67	67	B	791	802	Right-handed alpha
Helix 68	68	B	805	810	Right-handed 310
Helix 69	69	B	813	820	Right-handed alpha
Helix 70	70	B	823	834	Right-handed alpha
Helix 71	71	B	892	896	Right-handed 310
Helix 72	72	B	1025	1038	Right-handed alpha
Helix 73	73	B	1137	1141	Right-handed 310
Helix 74	74	B	1184	1188	Right-handed 310

There are 29 sheets in PDB entry 3V0B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	134	138	anti-parallel
Strand 3	A	19	23	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	42	48	anti-parallel
Strand 6	A	151	155	parallel
Strand 7	A	184	187	parallel
Strand 8	A	164	166	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	302	303	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	192	196	anti-parallel
Strand 3	A	372	375	anti-parallel
Strand 4	A	414	415	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	325	first strand
Strand 2	A	331	332	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	458	first strand
Strand 2	A	426	431	anti-parallel
Strand 3	A	541	545	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	481	first strand
Strand 2	A	679	681	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	569	first strand
Strand 2	A	581	583	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	623	first strand
Strand 2	A	632	633	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	887	890	first strand
Strand 2	A	877	884	anti-parallel
Strand 3	A	1066	1075	anti-parallel
Strand 4	A	914	917	anti-parallel
Strand 5	A	905	906	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	887	890	first strand
Strand 2	A	877	884	anti-parallel
Strand 3	A	1066	1075	anti-parallel
Strand 4	A	941	948	anti-parallel
Strand 5	A	1014	1021	anti-parallel
Strand 6	A	1026	1031	anti-parallel
Strand 7	A	1034	1040	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	897	900	first strand
Strand 2	A	924	927	anti-parallel
Strand 3	A	1052	1058	anti-parallel
Strand 4	A	962	969	anti-parallel
Strand 5	A	972	979	anti-parallel
Strand 6	A	982	988	anti-parallel
Strand 7	A	994	1000	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	935	936	first strand
Strand 2	A	1047	1048	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1004	1005	first strand
Strand 2	A	1149	1152	parallel
Strand 3	A	1142	1145	anti-parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1203	1205	first strand
Strand 2	A	1258	1264	anti-parallel
Strand 3	A	1246	1255	anti-parallel
Strand 4	A	1235	1240	anti-parallel
Strand 5	A	1221	1225	anti-parallel
Strand 6	A	1179	1185	anti-parallel
Strand 7	A	1190	1194	anti-parallel
Strand 8	A	1207	1209	anti-parallel

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There are 10 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1203	1205	first strand
Strand 2	A	1258	1264	anti-parallel
Strand 3	A	1246	1255	anti-parallel
Strand 4	A	1235	1240	anti-parallel
Strand 5	A	1282	1285	anti-parallel
Strand 6	A	1111	1115	anti-parallel
Strand 7	A	1159	1164	anti-parallel
Strand 8	A	1179	1185	anti-parallel
Strand 9	A	1190	1194	anti-parallel
Strand 10	A	1207	1209	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1122	1125	first strand
Strand 2	A	1134	1137	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	22	first strand
Strand 2	B	29	36	anti-parallel
Strand 3	B	39	42	anti-parallel
Strand 4	B	169	172	parallel
Strand 5	B	199	202	parallel
Strand 6	B	182	185	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	164	166	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	215	first strand
Strand 2	B	207	211	anti-parallel
Strand 3	B	363	365	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	248	first strand
Strand 2	B	257	261	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	373	first strand
Strand 2	B	376	377	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	418	first strand
Strand 2	B	401	406	anti-parallel
Strand 3	B	491	495	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	517	first strand
Strand 2	B	531	533	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	576	581	first strand
Strand 2	B	584	589	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	848	853	first strand
Strand 2	B	836	845	anti-parallel
Strand 3	B	1012	1020	anti-parallel
Strand 4	B	876	880	anti-parallel
Strand 5	B	868	871	anti-parallel

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There are 7 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	848	853	first strand
Strand 2	B	836	845	anti-parallel
Strand 3	B	1012	1020	anti-parallel
Strand 4	B	902	910	anti-parallel
Strand 5	B	964	971	anti-parallel
Strand 6	B	976	981	anti-parallel
Strand 7	B	984	990	anti-parallel

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There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	860	863	first strand
Strand 2	B	887	890	anti-parallel
Strand 3	B	1002	1005	anti-parallel
Strand 4	B	918	925	anti-parallel
Strand 5	B	928	935	anti-parallel
Strand 6	B	938	944	anti-parallel
Strand 7	B	950	955	anti-parallel

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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1068	1072	first strand
Strand 2	B	1077	1081	anti-parallel
Strand 3	B	1132	1135	anti-parallel
Strand 4	B	1121	1126	anti-parallel
Strand 5	B	1111	1117	anti-parallel
Strand 6	B	1144	1147	anti-parallel
Strand 7	B	1157	1160	anti-parallel
Strand 8	B	1163	1170	anti-parallel
Strand 9	B	1175	1179	anti-parallel

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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1068	1072	first strand
Strand 2	B	1077	1081	anti-parallel
Strand 3	B	1132	1135	anti-parallel
Strand 4	B	1121	1126	anti-parallel
Strand 5	B	1111	1117	anti-parallel
Strand 6	B	1094	1097	anti-parallel
Strand 7	B	1055	1060	anti-parallel
Strand 8	B	1190	1193	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3V0B

Analysis of interatomic Contacts of Structural Units in PDB entry:
3V0B