Analysis of interatomic Contacts of Structural Units in PDB entry:
3V0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V0C entry

There is 1 chain in PDB entry 3V0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 2ILE 1250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3V0C. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
53 57Right-handed 310
Helix 2
2
A
80 100Right-handed alpha
Helix 3
3
A
101 114Right-handed alpha
Helix 4
4
A
130 132Right-handed 310
Helix 5
5
A
200 204Right-handed 310
Helix 6
6
A
216 233Right-handed alpha
Helix 7
7
A
259 267Right-handed alpha
Helix 8
8
A
269 274Right-handed 310
Helix 9
9
A
275 299Right-handed alpha
Helix 10
10
A
309 322Right-handed alpha
Helix 11
11
A
334 348Right-handed alpha
Helix 12
12
A
350 358Right-handed alpha
Helix 13
13
A
401 405Right-handed 310
Helix 14
14
A
409 413Right-handed 310
Helix 15
15
A
460 462Right-handed 310
Helix 16
16
A
495 505Right-handed alpha
Helix 17
17
A
549 556Right-handed alpha
Helix 18
18
A
572 577Right-handed 310
Helix 19
19
A
587 595Right-handed alpha
Helix 20
20
A
603 618Right-handed alpha
Helix 21
21
A
634 638Right-handed 310
Helix 22
22
A
651 660Right-handed alpha
Helix 23
23
A
661 665Right-handed 310
Helix 24
24
A
687 721Right-handed alpha
Helix 25
25
A
721 743Right-handed alpha
Helix 26
26
A
745 752Right-handed alpha
Helix 27
27
A
765 800Right-handed alpha
Helix 28
28
A
800 825Right-handed alpha
Helix 29
29
A
830 834Right-handed 310
Helix 30
30
A
835 845Right-handed alpha
Helix 31
31
A
852 856Right-handed 310
Helix 32
32
A
859 872Right-handed alpha
Helix 33
33
A
873 877Right-handed 310
Helix 34
34
A
934 939Right-handed 310
Helix 35
35
A
1080 1091Right-handed alpha
Helix 36
36
A
1265 1271Right-handed alpha
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There are 12 sheets in PDB entry 3V0C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
144 148first strand
Strand 2
A
134 138anti-parallel
Strand 3
A
19 23anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
42 48anti-parallel
Strand 6
A
151 155parallel
Strand 7
A
184 187parallel
Strand 8
A
164 166anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
192 193first strand
Strand 2
A
374 375anti-parallel
Strand 3
A
414 415anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
195 196first strand
Strand 2
A
213 214anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
324 325first strand
Strand 2
A
331 332anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
454 458first strand
Strand 2
A
426 431anti-parallel
Strand 3
A
542 545parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
479 481first strand
Strand 2
A
679 681parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
879 880first strand
Strand 2
A
1066 1075anti-parallel
Strand 3
A
913 917anti-parallel
Strand 4
A
905 906anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
879 880first strand
Strand 2
A
1066 1075anti-parallel
Strand 3
A
941 948anti-parallel
Strand 4
A
1014 1021anti-parallel
Strand 5
A
1026 1031anti-parallel
Strand 6
A
1034 1040anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
895 900first strand
Strand 2
A
924 928anti-parallel
Strand 3
A
1052 1058anti-parallel
Strand 4
A
961 966anti-parallel
Strand 5
A
975 979anti-parallel
Strand 6
A
982 988anti-parallel
Strand 7
A
994 1000anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1207 1209first strand
Strand 2
A
1189 1194anti-parallel
Strand 3
A
1179 1186anti-parallel
Strand 4
A
1221 1223anti-parallel
Strand 5
A
1237 1239anti-parallel
Strand 6
A
1248 1253anti-parallel
Strand 7
A
1260 1264anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1207 1209first strand
Strand 2
A
1189 1194anti-parallel
Strand 3
A
1179 1186anti-parallel
Strand 4
A
1159 1163anti-parallel
Strand 5
A
1111 1113anti-parallel
Strand 6
A
1284 1285anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1122 1125first strand
Strand 2
A
1134 1137anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il