Analysis of interatomic Contacts of Structural Units in PDB entry:
3V0G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3V0G entry

There are 4 chains in PDB entry 3V0G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 250	ASP 575
B	GLY 238	ASP 575
C	GLN 250	ALA 573
D	ARG 246	ASP 575

There are 42 helices in PDB entry 3V0G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	289	300	Right-handed alpha
Helix 2	2	A	316	321	Right-handed 310
Helix 3	3	A	336	353	Right-handed alpha
Helix 4	4	A	367	381	Right-handed alpha
Helix 5	5	A	386	399	Right-handed alpha
Helix 6	6	A	412	429	Right-handed alpha
Helix 7	7	A	521	525	Right-handed 310
Helix 8	8	A	534	536	Right-handed 310
Helix 9	9	A	544	548	Right-handed 310
Helix 10	10	A	553	557	Right-handed 310
Helix 11	11	B	241	245	Right-handed 310
Helix 12	12	B	289	300	Right-handed alpha
Helix 13	13	B	316	321	Right-handed 310
Helix 14	14	B	336	353	Right-handed alpha
Helix 15	15	B	367	381	Right-handed alpha
Helix 16	16	B	386	399	Right-handed alpha
Helix 17	17	B	412	429	Right-handed alpha
Helix 18	18	B	521	525	Right-handed 310
Helix 19	19	B	534	536	Right-handed 310
Helix 20	20	B	546	548	Right-handed 310
Helix 21	21	B	553	557	Right-handed 310
Helix 22	22	C	289	300	Right-handed alpha
Helix 23	23	C	316	321	Right-handed 310
Helix 24	24	C	336	353	Right-handed alpha
Helix 25	25	C	367	381	Right-handed alpha
Helix 26	26	C	386	399	Right-handed alpha
Helix 27	27	C	412	429	Right-handed alpha
Helix 28	28	C	521	525	Right-handed 310
Helix 29	29	C	534	536	Right-handed 310
Helix 30	30	C	546	548	Right-handed 310
Helix 31	31	C	553	557	Right-handed 310
Helix 32	32	D	249	254	Right-handed 310
Helix 33	33	D	288	300	Right-handed alpha
Helix 34	34	D	316	321	Right-handed 310
Helix 35	35	D	336	353	Right-handed alpha
Helix 36	36	D	367	381	Right-handed alpha
Helix 37	37	D	386	399	Right-handed alpha
Helix 38	38	D	412	429	Right-handed alpha
Helix 39	39	D	521	525	Right-handed 310
Helix 40	40	D	534	536	Right-handed 310
Helix 41	41	D	546	548	Right-handed 310
Helix 42	42	D	553	557	Right-handed 310

There are 17 sheets in PDB entry 3V0G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	255	first strand
Strand 2	A	262	266	anti-parallel
Strand 3	A	271	274	anti-parallel
Strand 4	A	358	362	parallel
Strand 5	A	304	310	parallel
Strand 6	A	324	329	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	278	first strand
Strand 2	A	287	288	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	487	first strand
Strand 2	A	492	497	anti-parallel
Strand 3	A	439	447	anti-parallel
Strand 4	A	566	572	anti-parallel
Strand 5	A	540	543	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	475	first strand
Strand 2	A	460	466	anti-parallel
Strand 3	A	506	513	anti-parallel
Strand 4	A	527	532	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	266	first strand
Strand 2	B	271	274	anti-parallel
Strand 3	B	358	362	parallel
Strand 4	B	304	310	parallel
Strand 5	B	324	329	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	278	first strand
Strand 2	B	287	288	parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	487	first strand
Strand 2	B	492	497	anti-parallel
Strand 3	B	438	447	anti-parallel
Strand 4	B	503	504	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	487	first strand
Strand 2	B	492	497	anti-parallel
Strand 3	B	438	447	anti-parallel
Strand 4	B	565	572	anti-parallel
Strand 5	B	540	544	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	475	first strand
Strand 2	B	460	466	anti-parallel
Strand 3	B	506	513	anti-parallel
Strand 4	B	527	532	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	266	first strand
Strand 2	C	271	274	anti-parallel
Strand 3	C	358	362	parallel
Strand 4	C	304	310	parallel
Strand 5	C	324	329	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	278	first strand
Strand 2	C	287	288	parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	482	487	first strand
Strand 2	C	492	497	anti-parallel
Strand 3	C	439	447	anti-parallel
Strand 4	C	565	572	anti-parallel
Strand 5	C	540	544	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	469	475	first strand
Strand 2	C	460	466	anti-parallel
Strand 3	C	506	513	anti-parallel
Strand 4	C	527	532	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	257	first strand
Strand 2	D	260	262	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	266	first strand
Strand 2	D	271	274	anti-parallel
Strand 3	D	358	362	parallel
Strand 4	D	304	310	parallel
Strand 5	D	324	329	parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	482	487	first strand
Strand 2	D	492	497	anti-parallel
Strand 3	D	439	447	anti-parallel
Strand 4	D	565	572	anti-parallel
Strand 5	D	540	544	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	469	475	first strand
Strand 2	D	460	466	anti-parallel
Strand 3	D	506	513	anti-parallel
Strand 4	D	527	532	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3V0G

Analysis of interatomic Contacts of Structural Units in PDB entry:
3V0G