Analysis of interatomic Contacts of Structural Units in PDB entry:
3V0I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V0I entry

There is 1 chain in PDB entry 3V0I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 256ALA 573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3V0I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
291 300Right-handed alpha
Helix 2
2
A
336 354Right-handed alpha
Helix 3
3
A
367 381Right-handed alpha
Helix 4
4
A
386 399Right-handed alpha
Helix 5
5
A
402 404Right-handed 310
Helix 6
6
A
405 410Right-handed alpha
Helix 7
7
A
412 429Right-handed alpha
Helix 8
8
A
521 525Right-handed 310
Helix 9
9
A
534 536Right-handed 310
Helix 10
10
A
546 548Right-handed 310
Helix 11
11
A
553 557Right-handed 310
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There are 4 sheets in PDB entry 3V0I. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 268first strand
Strand 2
A
271 274anti-parallel
Strand 3
A
358 362parallel
Strand 4
A
304 308parallel
Strand 5
A
324 326parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 487first strand
Strand 2
A
492 497anti-parallel
Strand 3
A
438 447anti-parallel
Strand 4
A
503 504anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 487first strand
Strand 2
A
492 497anti-parallel
Strand 3
A
438 447anti-parallel
Strand 4
A
565 572anti-parallel
Strand 5
A
540 544anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 475first strand
Strand 2
A
460 466anti-parallel
Strand 3
A
506 513anti-parallel
Strand 4
A
527 532anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il