Analysis of interatomic Contacts of Structural Units in PDB entry:
3V0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V0M entry

There are 2 chains in PDB entry 3V0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 58LYS 346
B
 ALA 58LYS 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3V0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
101 112Right-handed alpha
Helix 2
2
A
123 128Right-handed 310
Helix 3
3
A
129 141Right-handed alpha
Helix 4
4
A
155 159Right-handed 310
Helix 5
5
A
180 187Right-handed alpha
Helix 6
6
A
187 199Right-handed alpha
Helix 7
7
A
199 204Right-handed alpha
Helix 8
8
A
221 225Right-handed 310
Helix 9
9
A
274 294Right-handed alpha
Helix 10
10
A
300 313Right-handed alpha
Helix 11
11
A
321 324Right-handed 310
Helix 12
12
A
326 331Right-handed alpha
Helix 13
13
B
101 111Right-handed alpha
Helix 14
14
B
123 128Right-handed 310
Helix 15
15
B
129 141Right-handed alpha
Helix 16
16
B
155 159Right-handed 310
Helix 17
17
B
180 195Right-handed alpha
Helix 18
18
B
199 203Right-handed 310
Helix 19
19
B
221 225Right-handed 310
Helix 20
20
B
240 244Right-handed 310
Helix 21
21
B
274 294Right-handed alpha
Helix 22
22
B
300 313Right-handed alpha
Helix 23
23
B
321 324Right-handed 310
Helix 24
24
B
326 331Right-handed alpha
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There are 4 sheets in PDB entry 3V0M. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
317 319parallel
Strand 3
A
228 231parallel
Strand 4
A
269 273anti-parallel
Strand 5
A
206 210anti-parallel
Strand 6
A
115 121parallel
Strand 7
A
146 153parallel
Strand 8
A
168 174parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
341 343anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
317 319parallel
Strand 3
B
228 231parallel
Strand 4
B
269 273anti-parallel
Strand 5
B
206 210anti-parallel
Strand 6
B
115 122parallel
Strand 7
B
146 153parallel
Strand 8
B
168 174parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 216first strand
Strand 2
B
341 343anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il