Analysis of interatomic Contacts of Structural Units in PDB entry:
3V0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V0T entry

There is 1 chain in PDB entry 3V0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3V0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 24Right-handed 310
Helix 2
2
A
33 46Right-handed alpha
Helix 3
3
A
61 72Right-handed alpha
Helix 4
4
A
73 74Right-handed 310
Helix 5
5
A
75 79Right-handed 310
Helix 6
6
A
100 116Right-handed alpha
Helix 7
7
A
133 147Right-handed alpha
Helix 8
8
A
159 170Right-handed alpha
Helix 9
9
A
189 198Right-handed alpha
Helix 10
10
A
207 218Right-handed alpha
Helix 11
11
A
246 255Right-handed alpha
Helix 12
12
A
258 269Right-handed alpha
Helix 13
13
A
282 292Right-handed alpha
Helix 14
14
A
293 295Right-handed 310
Helix 15
15
A
298 309Right-handed alpha
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There are 3 sheets in PDB entry 3V0T. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
12 14anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
50 52parallel
Strand 3
A
80 85parallel
Strand 4
A
120 125parallel
Strand 5
A
150 156parallel
Strand 6
A
174 178parallel
Strand 7
A
200 204parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
94 97anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il