Analysis of interatomic Contacts of Structural Units in PDB entry:
3V10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V10 entry

There are 2 chains in PDB entry 3V10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 30MET 347
B
ALA 30LYS 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3V10. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
132 136Right-handed 310
Helix 2
2
A
259 266Right-handed alpha
Helix 3
3
A
281 286Right-handed alpha
Helix 4
4
A
326 331Right-handed alpha
Helix 5
5
B
132 137Right-handed 310
Helix 6
6
B
259 266Right-handed alpha
Helix 7
7
B
281 286Right-handed alpha
Helix 8
8
B
326 331Right-handed alpha
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There are 16 sheets in PDB entry 3V10. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
39 45first strand
Strand 2
A
57 64anti-parallel
Strand 3
A
141 152anti-parallel
Strand 4
A
340 344anti-parallel
Strand 5
A
100 106parallel
Strand 6
A
114 122anti-parallel
Strand 7
A
125 130anti-parallel
Strand 8
A
79 83anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
39 45first strand
Strand 2
A
57 64anti-parallel
Strand 3
A
141 152anti-parallel
Strand 4
A
90 94anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
49 50first strand
Strand 2
A
179 182parallel
Strand 3
A
160 163anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
66 67first strand
Strand 2
A
70 71anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
196 202first strand
Strand 2
A
209 216anti-parallel
Strand 3
A
289 298anti-parallel
Strand 4
A
237 239anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
196 202first strand
Strand 2
A
209 216anti-parallel
Strand 3
A
289 298anti-parallel
Strand 4
A
245 250anti-parallel
Strand 5
A
253 258anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
268 272first strand
Strand 2
A
275 280anti-parallel
Strand 3
A
227 233anti-parallel
Strand 4
A
305 315anti-parallel
Strand 5
A
321 322anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
268 272first strand
Strand 2
A
275 280anti-parallel
Strand 3
A
227 233anti-parallel
Strand 4
A
305 315anti-parallel
Strand 5
A
332 335anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
39 45first strand
Strand 2
B
57 64anti-parallel
Strand 3
B
141 152anti-parallel
Strand 4
B
90 94anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
39 45first strand
Strand 2
B
57 64anti-parallel
Strand 3
B
141 152anti-parallel
Strand 4
B
340 344anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
79 83first strand
Strand 2
B
125 130anti-parallel
Strand 3
B
117 122anti-parallel
Strand 4
B
100 104anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
160 163first strand
Strand 2
B
179 182anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
196 202first strand
Strand 2
B
209 216anti-parallel
Strand 3
B
289 298anti-parallel
Strand 4
B
237 239anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
196 202first strand
Strand 2
B
209 216anti-parallel
Strand 3
B
289 298anti-parallel
Strand 4
B
245 250anti-parallel
Strand 5
B
253 258anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
268 272first strand
Strand 2
B
275 280anti-parallel
Strand 3
B
227 233anti-parallel
Strand 4
B
305 315anti-parallel
Strand 5
B
321 322anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
268 272first strand
Strand 2
B
275 280anti-parallel
Strand 3
B
227 233anti-parallel
Strand 4
B
305 315anti-parallel
Strand 5
B
332 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il