Analysis of interatomic Contacts of Structural Units in PDB entry:
3V11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V11 entry

There are 8 chains in PDB entry 3V11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7ILE 415
B
 MET 1VAL 264
C
 SER 3PRO 19
D
 G 2 G 7
D
 G 9 G 19
D
 A 21 G 31
D
 U 33 G 53
D
 C 56 A 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3V11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 30Right-handed alpha
Helix 2
2
A
39 44Right-handed alpha
Helix 3
3
A
100 109Right-handed alpha
Helix 4
4
A
126 140Right-handed alpha
Helix 5
5
A
150 154Right-handed 310
Helix 6
6
A
157 170Right-handed alpha
Helix 7
7
A
190 201Right-handed alpha
Helix 8
8
A
229 233Right-handed 310
Helix 9
9
A
302 307Right-handed 310
Helix 10
10
B
42 46Right-handed 310
Helix 11
11
B
88 115Right-handed alpha
Helix 12
12
B
117 129Right-handed alpha
Helix 13
13
B
135 146Right-handed alpha
Helix 14
14
B
148 154Right-handed alpha
Helix 15
15
B
160 167Right-handed alpha
Helix 16
16
B
191 204Right-handed alpha
Helix 17
17
B
235 237Right-handed 310
Helix 18
18
B
238 256Right-handed alpha
Helix 19
19
C
4 16Right-handed alpha
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There are 6 sheets in PDB entry 3V11. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 58first strand
Strand 2
A
84 93anti-parallel
Strand 3
A
11 14parallel
Strand 4
A
113 118parallel
Strand 5
A
144 148parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 275first strand
Strand 2
A
252 260anti-parallel
Strand 3
A
315 318anti-parallel
Strand 4
A
214 222anti-parallel
Strand 5
A
236 244anti-parallel
Strand 6
A
295 298anti-parallel
Strand 7
A
278 281anti-parallel
Strand 8
A
284 285anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 248first strand
Strand 2
A
288 289anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 335first strand
Strand 2
A
377 387anti-parallel
Strand 3
A
366 370anti-parallel
Strand 4
A
356 361anti-parallel
Strand 5
A
394 400anti-parallel
Strand 6
A
405 412anti-parallel
Strand 7
A
325 335anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 23first strand
Strand 2
B
26 31anti-parallel
Strand 3
B
37 41anti-parallel
Strand 4
B
77 81parallel
Strand 5
B
65 72anti-parallel
Strand 6
B
14 23anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 221first strand
Strand 2
B
226 233anti-parallel
Strand 3
B
177 186anti-parallel
Strand 4
B
260 261anti-parallel
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