Analysis of interatomic Contacts of Structural Units in PDB entry:
3V17


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V17 entry

There are 4 chains in PDB entry 3V17 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PHE 277
C
 SER 2PHE 277
B
 SER 2PHE 277
D
 SER 2PHE 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3V17. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 41Right-handed alpha
Helix 2
2
A
51 60Right-handed alpha
Helix 3
3
A
61 63Right-handed 310
Helix 4
4
A
90 94Right-handed 310
Helix 5
5
A
129 136Right-handed alpha
Helix 6
6
A
137 145Right-handed alpha
Helix 7
7
A
153 156Right-handed 310
Helix 8
8
A
158 163Right-handed alpha
Helix 9
9
A
165 179Right-handed alpha
Helix 10
10
A
212 228Right-handed alpha
Helix 11
11
A
229 231Right-handed 310
Helix 12
12
C
26 41Right-handed alpha
Helix 13
13
C
51 60Right-handed alpha
Helix 14
14
C
61 63Right-handed 310
Helix 15
15
C
90 94Right-handed 310
Helix 16
16
C
129 136Right-handed alpha
Helix 17
17
C
137 145Right-handed alpha
Helix 18
18
C
153 156Right-handed 310
Helix 19
19
C
165 179Right-handed alpha
Helix 20
20
C
212 227Right-handed alpha
Helix 21
21
C
228 231Right-handed 310
Helix 22
22
B
26 41Right-handed alpha
Helix 23
23
B
51 60Right-handed alpha
Helix 24
24
B
61 63Right-handed 310
Helix 25
25
B
90 94Right-handed 310
Helix 26
26
B
129 136Right-handed alpha
Helix 27
27
B
137 145Right-handed alpha
Helix 28
28
B
153 156Right-handed 310
Helix 29
29
B
158 162Right-handed 310
Helix 30
30
B
165 179Right-handed alpha
Helix 31
31
B
212 228Right-handed alpha
Helix 32
32
B
229 231Right-handed 310
Helix 33
33
D
26 41Right-handed alpha
Helix 34
34
D
51 60Right-handed alpha
Helix 35
35
D
61 63Right-handed 310
Helix 36
36
D
90 94Right-handed 310
Helix 37
37
D
129 136Right-handed alpha
Helix 38
38
D
137 145Right-handed alpha
Helix 39
39
D
153 156Right-handed 310
Helix 40
40
D
168 179Right-handed alpha
Helix 41
41
D
212 227Right-handed alpha
Helix 42
42
D
228 231Right-handed 310
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There are 16 sheets in PDB entry 3V17. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
14 17anti-parallel
Strand 3
A
42 45parallel
Strand 4
A
243 247anti-parallel
Strand 5
A
109 116anti-parallel
Strand 6
A
265 271anti-parallel
Strand 7
A
77 84anti-parallel
Strand 8
A
73 74anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
124 128anti-parallel
Strand 3
A
251 255anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
148 151anti-parallel
Strand 3
A
205 208anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
196 198anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
14 17anti-parallel
Strand 3
C
42 45parallel
Strand 4
C
243 247anti-parallel
Strand 5
C
109 116anti-parallel
Strand 6
C
265 271anti-parallel
Strand 7
C
77 84anti-parallel
Strand 8
C
73 74anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
233 236first strand
Strand 2
C
124 128anti-parallel
Strand 3
C
251 255anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
182 185first strand
Strand 2
C
148 151anti-parallel
Strand 3
C
205 208anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 189first strand
Strand 2
C
196 198anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
14 17anti-parallel
Strand 3
B
42 45parallel
Strand 4
B
243 247anti-parallel
Strand 5
B
109 116anti-parallel
Strand 6
B
265 271anti-parallel
Strand 7
B
80 84anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 236first strand
Strand 2
B
124 128anti-parallel
Strand 3
B
251 255anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 185first strand
Strand 2
B
148 151anti-parallel
Strand 3
B
205 208anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 189first strand
Strand 2
B
196 198anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
14 17anti-parallel
Strand 3
D
42 45parallel
Strand 4
D
243 247anti-parallel
Strand 5
D
109 116anti-parallel
Strand 6
D
265 271anti-parallel
Strand 7
D
80 84anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
233 236first strand
Strand 2
D
124 128anti-parallel
Strand 3
D
251 255anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
182 185first strand
Strand 2
D
148 151anti-parallel
Strand 3
D
205 208anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
187 189first strand
Strand 2
D
196 198anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il