Analysis of interatomic Contacts of Structural Units in PDB entry:
3V1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V1T entry

There are 2 chains in PDB entry 3V1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 PRO 29ALA 454
D
 PRO 29ALA 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3V1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
56 65Right-handed alpha
Helix 2
2
C
95 98Right-handed 310
Helix 3
3
C
99 107Right-handed alpha
Helix 4
4
C
109 111Right-handed 310
Helix 5
5
C
126 129Right-handed 310
Helix 6
6
C
131 150Right-handed alpha
Helix 7
7
C
171 173Right-handed 310
Helix 8
8
C
174 182Right-handed alpha
Helix 9
9
C
183 187Right-handed 310
Helix 10
10
C
223 236Right-handed alpha
Helix 11
11
C
245 247Right-handed 310
Helix 12
12
C
248 260Right-handed alpha
Helix 13
13
C
272 285Right-handed alpha
Helix 14
14
C
303 307Right-handed 310
Helix 15
15
C
308 320Right-handed alpha
Helix 16
16
C
320 333Right-handed alpha
Helix 17
17
C
347 353Right-handed alpha
Helix 18
18
C
357 381Right-handed alpha
Helix 19
19
C
407 412Right-handed alpha
Helix 20
20
C
420 433Right-handed alpha
Helix 21
21
C
434 437Right-handed 310
Helix 22
22
D
56 65Right-handed alpha
Helix 23
23
D
95 98Right-handed 310
Helix 24
24
D
99 107Right-handed alpha
Helix 25
25
D
108 111Right-handed 310
Helix 26
26
D
126 129Right-handed 310
Helix 27
27
D
131 150Right-handed alpha
Helix 28
28
D
171 173Right-handed 310
Helix 29
29
D
174 182Right-handed alpha
Helix 30
30
D
183 187Right-handed 310
Helix 31
31
D
223 236Right-handed alpha
Helix 32
32
D
245 247Right-handed 310
Helix 33
33
D
248 259Right-handed alpha
Helix 34
34
D
272 285Right-handed alpha
Helix 35
35
D
303 307Right-handed 310
Helix 36
36
D
308 320Right-handed alpha
Helix 37
37
D
320 333Right-handed alpha
Helix 38
38
D
347 353Right-handed alpha
Helix 39
39
D
357 380Right-handed alpha
Helix 40
40
D
406 412Right-handed alpha
Helix 41
41
D
420 433Right-handed alpha
Helix 42
42
D
434 437Right-handed 310
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There are 4 sheets in PDB entry 3V1T. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 52first strand
Strand 2
C
83 89parallel
Strand 3
C
113 124parallel
Strand 4
C
157 163parallel
Strand 5
C
192 196parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 265first strand
Strand 2
C
239 244parallel
Strand 3
C
215 219parallel
Strand 4
C
291 294parallel
Strand 5
C
341 345parallel
Strand 6
C
384 390parallel
Strand 7
C
443 446parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
70 71first strand
Strand 2
D
47 52parallel
Strand 3
D
83 89parallel
Strand 4
D
113 124parallel
Strand 5
D
157 163parallel
Strand 6
D
192 196parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
262 265first strand
Strand 2
D
239 244parallel
Strand 3
D
215 219parallel
Strand 4
D
291 294parallel
Strand 5
D
341 345parallel
Strand 6
D
384 390parallel
Strand 7
D
443 446parallel
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