Analysis of interatomic Contacts of Structural Units in PDB entry:
3V1U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V1U entry

There is 1 chain in PDB entry 3V1U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 29ALA 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3V1U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 65Right-handed alpha
Helix 2
2
A
95 98Right-handed 310
Helix 3
3
A
99 110Right-handed alpha
Helix 4
4
A
126 129Right-handed 310
Helix 5
5
A
131 150Right-handed alpha
Helix 6
6
A
171 173Right-handed 310
Helix 7
7
A
174 182Right-handed alpha
Helix 8
8
A
183 187Right-handed 310
Helix 9
9
A
223 236Right-handed alpha
Helix 10
10
A
245 249Right-handed 310
Helix 11
11
A
250 260Right-handed alpha
Helix 12
12
A
272 286Right-handed alpha
Helix 13
13
A
308 320Right-handed alpha
Helix 14
14
A
320 333Right-handed alpha
Helix 15
15
A
347 353Right-handed alpha
Helix 16
16
A
357 381Right-handed alpha
Helix 17
17
A
405 410Right-handed alpha
Helix 18
18
A
420 433Right-handed alpha
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There are 2 sheets in PDB entry 3V1U. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 52first strand
Strand 2
A
83 89parallel
Strand 3
A
113 124parallel
Strand 4
A
157 163parallel
Strand 5
A
192 196parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 265first strand
Strand 2
A
239 244parallel
Strand 3
A
215 219parallel
Strand 4
A
291 294parallel
Strand 5
A
341 345parallel
Strand 6
A
384 390parallel
Strand 7
A
443 446parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il