Analysis of interatomic Contacts of Structural Units in PDB entry:
3V2I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V2I entry

There is 1 chain in PDB entry 3V2I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LEU 196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 3V2I. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
18 20Right-handed 310
Helix 3
3
A
21 35Right-handed alpha
Helix 4
4
A
42 44Right-handed 310
Helix 5
5
A
66 68Right-handed 310
Helix 6
6
A
69 82Right-handed alpha
Helix 7
7
A
84 86Right-handed 310
Helix 8
8
A
113 124Right-handed alpha
Helix 9
9
A
154 158Right-handed alpha
Helix 10
10
A
163 186Right-handed alpha
Helix 11
11
A
188 196Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 3V2I.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
39 41first strand
Strand 2
A
46 53anti-parallel
Strand 3
A
56 63anti-parallel
Strand 4
A
4 7parallel
Strand 5
A
88 94parallel
Strand 6
A
129 134parallel
Strand 7
A
102 106anti-parallel
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il