Analysis of interatomic Contacts of Structural Units in PDB entry:
3V39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V39 entry

There is 1 chain in PDB entry 3V39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 37ALA 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3V39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 85Right-handed alpha
Helix 2
2
A
117 131Right-handed alpha
Helix 3
3
A
166 181Right-handed alpha
Helix 4
4
A
187 201Right-handed alpha
Helix 5
5
A
220 224Right-handed 310
Helix 6
6
A
239 251Right-handed alpha
Helix 7
7
A
252 263Right-handed alpha
Helix 8
8
A
264 278Right-handed alpha
Helix 9
9
A
307 323Right-handed alpha
Helix 10
10
A
327 331Right-handed 310
Helix 11
11
A
347 351Right-handed 310
Helix 12
12
A
396 413Right-handed alpha
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There are 3 sheets in PDB entry 3V39. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
38 48anti-parallel
Strand 3
A
376 387anti-parallel
Strand 4
A
364 373anti-parallel
Strand 5
A
354 361anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
304 306anti-parallel
Strand 3
A
284 285anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 218first strand
Strand 2
A
135 141parallel
Strand 3
A
104 109parallel
Strand 4
A
91 98anti-parallel
Strand 5
A
231 236anti-parallel
Strand 6
A
436 437anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il