Analysis of interatomic Contacts of Structural Units in PDB entry:
3V3K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3V3K entry

There are 16 chains in PDB entry 3V3K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 141	SER 403
B	THR 25	GLY 189
C	ASN 148	SER 403
D	PRO 26	GLY 189
E	GLU 143	SER 403
F	THR 25	GLY 189
G	ASN 148	SER 403
H	THR 25	GLY 189
I	ALA 141	SER 403
J	THR 25	GLY 189
K	ASN 148	SER 403
L	THR 25	GLY 189
M	ALA 141	SER 403
N	THR 25	GLY 189
O	ASN 148	SER 403
P	THR 25	GLY 189

There are 97 helices in PDB entry 3V3K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	181	196	Right-handed alpha
Helix 2	2	A	207	220	Right-handed alpha
Helix 3	3	A	258	264	Right-handed alpha
Helix 4	4	A	270	274	Right-handed 310
Helix 5	5	A	348	361	Right-handed alpha
Helix 6	6	A	365	379	Right-handed alpha
Helix 7	7	B	33	37	Right-handed 310
Helix 8	8	B	39	56	Right-handed alpha
Helix 9	9	B	62	83	Right-handed alpha
Helix 10	10	B	103	128	Right-handed alpha
Helix 11	11	B	136	142	Right-handed alpha
Helix 12	12	B	148	162	Right-handed alpha
Helix 13	13	C	181	196	Right-handed alpha
Helix 14	14	C	207	221	Right-handed alpha
Helix 15	15	C	258	264	Right-handed alpha
Helix 16	16	C	270	274	Right-handed 310
Helix 17	17	C	348	361	Right-handed alpha
Helix 18	18	C	365	379	Right-handed alpha
Helix 19	19	D	33	37	Right-handed 310
Helix 20	20	D	39	56	Right-handed alpha
Helix 21	21	D	62	83	Right-handed alpha
Helix 22	22	D	103	128	Right-handed alpha
Helix 23	23	D	136	142	Right-handed alpha
Helix 24	24	D	148	163	Right-handed alpha
Helix 25	25	E	181	196	Right-handed alpha
Helix 26	26	E	207	220	Right-handed alpha
Helix 27	27	E	258	263	Right-handed alpha
Helix 28	28	E	270	274	Right-handed 310
Helix 29	29	E	348	361	Right-handed alpha
Helix 30	30	E	365	379	Right-handed alpha
Helix 31	31	F	33	37	Right-handed 310
Helix 32	32	F	39	56	Right-handed alpha
Helix 33	33	F	62	83	Right-handed alpha
Helix 34	34	F	103	128	Right-handed alpha
Helix 35	35	F	136	142	Right-handed alpha
Helix 36	36	F	148	162	Right-handed alpha
Helix 37	37	G	181	196	Right-handed alpha
Helix 38	38	G	207	221	Right-handed alpha
Helix 39	39	G	258	265	Right-handed alpha
Helix 40	40	G	270	274	Right-handed 310
Helix 41	41	G	348	361	Right-handed alpha
Helix 42	42	G	365	379	Right-handed alpha
Helix 43	43	H	33	37	Right-handed 310
Helix 44	44	H	39	56	Right-handed alpha
Helix 45	45	H	62	83	Right-handed alpha
Helix 46	46	H	103	128	Right-handed alpha
Helix 47	47	H	138	143	Right-handed alpha
Helix 48	48	H	148	162	Right-handed alpha
Helix 49	49	I	142	147	Right-handed alpha
Helix 50	50	I	181	196	Right-handed alpha
Helix 51	51	I	207	221	Right-handed alpha
Helix 52	52	I	258	264	Right-handed alpha
Helix 53	53	I	270	274	Right-handed 310
Helix 54	54	I	348	361	Right-handed alpha
Helix 55	55	I	365	379	Right-handed alpha
Helix 56	56	J	33	37	Right-handed 310
Helix 57	57	J	39	56	Right-handed alpha
Helix 58	58	J	62	83	Right-handed alpha
Helix 59	59	J	103	128	Right-handed alpha
Helix 60	60	J	136	142	Right-handed alpha
Helix 61	61	J	148	162	Right-handed alpha
Helix 62	62	K	181	196	Right-handed alpha
Helix 63	63	K	207	221	Right-handed alpha
Helix 64	64	K	258	264	Right-handed alpha
Helix 65	65	K	270	274	Right-handed 310
Helix 66	66	K	348	361	Right-handed alpha
Helix 67	67	K	365	379	Right-handed alpha
Helix 68	68	L	33	37	Right-handed 310
Helix 69	69	L	39	56	Right-handed alpha
Helix 70	70	L	62	83	Right-handed alpha
Helix 71	71	L	103	128	Right-handed alpha
Helix 72	72	L	136	143	Right-handed alpha
Helix 73	73	L	148	163	Right-handed alpha
Helix 74	74	M	142	147	Right-handed alpha
Helix 75	75	M	181	196	Right-handed alpha
Helix 76	76	M	207	221	Right-handed alpha
Helix 77	77	M	258	264	Right-handed alpha
Helix 78	78	M	270	274	Right-handed 310
Helix 79	79	M	348	361	Right-handed alpha
Helix 80	80	M	365	379	Right-handed alpha
Helix 81	81	N	33	37	Right-handed 310
Helix 82	82	N	39	56	Right-handed alpha
Helix 83	83	N	62	83	Right-handed alpha
Helix 84	84	N	103	128	Right-handed alpha
Helix 85	85	N	148	162	Right-handed alpha
Helix 86	86	O	181	196	Right-handed alpha
Helix 87	87	O	207	221	Right-handed alpha
Helix 88	88	O	258	264	Right-handed alpha
Helix 89	89	O	270	274	Right-handed 310
Helix 90	90	O	348	361	Right-handed alpha
Helix 91	91	O	365	379	Right-handed alpha
Helix 92	92	P	33	37	Right-handed 310
Helix 93	93	P	39	56	Right-handed alpha
Helix 94	94	P	62	83	Right-handed alpha
Helix 95	95	P	103	128	Right-handed alpha
Helix 96	96	P	136	143	Right-handed alpha
Helix 97	97	P	148	162	Right-handed alpha

There are 33 sheets in PDB entry 3V3K. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	204	first strand
Strand 2	A	163	169	parallel
Strand 3	A	230	235	parallel
Strand 4	A	278	283	parallel
Strand 5	A	327	331	parallel
Strand 6	A	388	392	anti-parallel
Strand 7	C	388	393	anti-parallel
Strand 8	C	327	331	anti-parallel
Strand 9	C	278	283	parallel
Strand 10	C	229	235	parallel
Strand 11	C	163	169	parallel
Strand 12	C	198	204	parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	239	first strand
Strand 2	A	242	244	anti-parallel
Strand 3	A	255	257	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	C	320	321	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	340	342	anti-parallel
Strand 3	B	187	188	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	95	98	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	239	first strand
Strand 2	C	242	244	anti-parallel
Strand 3	C	255	257	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	347	first strand
Strand 2	C	340	342	anti-parallel
Strand 3	D	187	188	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	87	first strand
Strand 2	D	95	98	anti-parallel

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There are 12 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	204	first strand
Strand 2	E	163	169	parallel
Strand 3	E	230	235	parallel
Strand 4	E	278	283	parallel
Strand 5	E	327	331	parallel
Strand 6	E	388	393	anti-parallel
Strand 7	G	388	393	anti-parallel
Strand 8	G	327	331	anti-parallel
Strand 9	G	278	283	parallel
Strand 10	G	230	235	parallel
Strand 11	G	163	169	parallel
Strand 12	G	198	204	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	242	244	first strand
Strand 2	E	255	257	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	294	295	first strand
Strand 2	G	320	321	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	320	321	first strand
Strand 2	G	294	295	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	347	first strand
Strand 2	E	340	342	anti-parallel
Strand 3	F	187	188	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	87	first strand
Strand 2	F	95	98	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	238	239	first strand
Strand 2	G	242	244	anti-parallel
Strand 3	G	255	257	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	346	347	first strand
Strand 2	G	340	342	anti-parallel
Strand 3	H	187	188	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	84	87	first strand
Strand 2	H	95	98	anti-parallel

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There are 12 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	198	204	first strand
Strand 2	I	163	169	parallel
Strand 3	I	230	235	parallel
Strand 4	I	278	283	parallel
Strand 5	I	327	331	parallel
Strand 6	I	388	393	anti-parallel
Strand 7	K	388	393	anti-parallel
Strand 8	K	327	331	anti-parallel
Strand 9	K	278	283	parallel
Strand 10	K	229	235	parallel
Strand 11	K	163	169	parallel
Strand 12	K	198	204	parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	238	239	first strand
Strand 2	I	242	244	anti-parallel
Strand 3	I	255	257	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	294	295	first strand
Strand 2	K	320	321	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	346	347	first strand
Strand 2	I	340	342	anti-parallel
Strand 3	J	187	188	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	84	87	first strand
Strand 2	J	95	98	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	238	239	first strand
Strand 2	K	242	244	anti-parallel
Strand 3	K	255	257	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	346	347	first strand
Strand 2	K	340	342	anti-parallel
Strand 3	L	187	188	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	84	87	first strand
Strand 2	L	95	98	anti-parallel

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There are 12 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	198	204	first strand
Strand 2	M	163	169	parallel
Strand 3	M	230	235	parallel
Strand 4	M	278	283	parallel
Strand 5	M	327	331	parallel
Strand 6	M	389	393	anti-parallel
Strand 7	O	388	393	anti-parallel
Strand 8	O	327	331	anti-parallel
Strand 9	O	278	283	parallel
Strand 10	O	229	235	parallel
Strand 11	O	163	169	parallel
Strand 12	O	198	204	parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	238	239	first strand
Strand 2	M	242	244	anti-parallel
Strand 3	M	255	257	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	294	295	first strand
Strand 2	O	320	321	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	346	347	first strand
Strand 2	M	340	342	anti-parallel
Strand 3	N	187	188	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	84	87	first strand
Strand 2	N	95	98	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	238	239	first strand
Strand 2	O	242	244	anti-parallel
Strand 3	O	255	257	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	346	347	first strand
Strand 2	O	340	342	anti-parallel
Strand 3	P	187	188	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	84	87	first strand
Strand 2	P	95	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3V3K

Analysis of interatomic Contacts of Structural Units in PDB entry:
3V3K