Analysis of interatomic Contacts of Structural Units in PDB entry:
3V3T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V3T entry

There is 1 chain in PDB entry 3V3T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3V3T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 3Right-handed 310
Helix 2
2
A
11 25Right-handed alpha
Helix 3
3
A
36 42Right-handed alpha
Helix 4
4
A
61 70Right-handed alpha
Helix 5
5
A
72 84Right-handed alpha
Helix 6
6
A
98 116Right-handed alpha
Helix 7
7
A
133 151Right-handed alpha
Helix 8
8
A
165 167Right-handed 310
Helix 9
9
A
169 186Right-handed alpha
Helix 10
10
A
187 189Right-handed 310
Helix 11
11
A
197 207Right-handed alpha
Helix 12
12
A
221 232Right-handed alpha
Helix 13
13
A
255 264Right-handed alpha
Helix 14
14
A
288 305Right-handed alpha
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There are 2 sheets in PDB entry 3V3T. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
5 9parallel
Strand 3
A
89 95parallel
Strand 4
A
120 127parallel
Strand 5
A
158 163parallel
Strand 6
A
209 215parallel
Strand 7
A
279 285anti-parallel
Strand 8
A
245 250anti-parallel
Strand 9
A
268 273parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
49 51parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il